Miyakogusa Predicted Gene

Lj2g3v0914620.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0914620.1 tr|A9T8L9|A9T8L9_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_141946,36.89,8e-17,seg,NULL; FAMILY NOT
NAMED,NULL,CUFF.35704.1
         (480 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g00420.1                                                       638   0.0  
Glyma18g11930.1                                                        57   4e-08
Glyma02g25230.1                                                        56   1e-07

>Glyma01g00420.1 
          Length = 805

 Score =  638 bits (1645), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/488 (67%), Positives = 377/488 (77%), Gaps = 25/488 (5%)

Query: 1   MKSSMGRIPLSARKGCQNYVGNPHNLKPDDWHVEIAVPRIRSTAEFQNEESD-CSSVSKP 59
           MKS+MGRIP S +    NY  N H  KPDDW V++AVPR  S  EFQN+ES+ CS   +P
Sbjct: 329 MKSTMGRIPFSVK----NYARNNHQ-KPDDWDVQVAVPRPHSLVEFQNKESESCSVTKQP 383

Query: 60  METMSADVTSLQDVGYEYEPIDDKQECSSVSNLTTDNYDTKFLT-TQDCCINNELQKPIA 118
           +ETMSADVTS+QDVGYEY P+DDKQECSSVSN  TDN++TKFL+ + DC I    + PIA
Sbjct: 384 LETMSADVTSMQDVGYEYVPMDDKQECSSVSNPPTDNFETKFLSASHDCFIQ---KMPIA 440

Query: 119 RSQRFGEEISCNEQIYSKKMQHPRSSDSTVTVSNPQTTHECCAQMANEMICIQNQLSDME 178
           RSQRF EEI+ +E++   KMQHP SSDSTVT    QT HECC QMANEMICIQNQLSD+E
Sbjct: 441 RSQRFSEEITSDERV---KMQHPTSSDSTVTEPTHQTAHECCMQMANEMICIQNQLSDIE 497

Query: 179 IKQANTMHQLQMSITGIVDALSTIQSRMLSLEYAVDRLNQESLQGGRHSYSENSRLVRQS 238
           IKQAN MHQLQM  TGI+DALSTIQSR+  LE   DRL+QESLQ GRHSYSENS+L RQS
Sbjct: 498 IKQANMMHQLQMFTTGIMDALSTIQSRITGLENVFDRLSQESLQRGRHSYSENSKLGRQS 557

Query: 239 QNVASPKFPICTP--RPSAEISNKQS-AMSVKNSESWEKTTFSRSQPRIHVGDSEDLWKS 295
           +NVASP+F ICTP  RPS EI+NKQS +MSVKNSESWEK  FSRSQPRIH GDS D+WKS
Sbjct: 558 ENVASPRFSICTPTPRPSVEINNKQSDSMSVKNSESWEKKAFSRSQPRIHSGDSLDMWKS 617

Query: 296 CNVNVARKFTEKDILNCSGKDTQRTSSAQMRKNDGIFAA------RNSCSESNTNQWKCV 349
             V   RKFTEKD+LN S KDT +  S    KNDGIF+A      RN CSESN N WK V
Sbjct: 618 NKVKATRKFTEKDVLNSSSKDTLQMGSV---KNDGIFSATRITNARNDCSESNNNYWKHV 674

Query: 350 KRLICEGDLNSAYMEAXXXXXXXXXXXXXXKTGPVIESLSVKTVNVLFSTLASYLVEANY 409
           KRL+CEGDLNSAY EA               TGPVIESLSVKT+NVL STLASYL+E   
Sbjct: 675 KRLVCEGDLNSAYREALCFSDEFILVELLNTTGPVIESLSVKTMNVLLSTLASYLLEGKL 734

Query: 410 FSTIMPWLQQVVDMSTIHGPNCISLSTDAKEQLLSAIQEAVNLNIFSPAERRCVAEIAMK 469
           F+TI+PWLQQ+V+MSTIHGPNCI++S +AK+ LLSA+QEA+NL+ FS AERR VAE+AMK
Sbjct: 735 FNTIIPWLQQIVEMSTIHGPNCIAISIEAKKHLLSAVQEAMNLHFFSHAERRRVAELAMK 794

Query: 470 LHHMWGKI 477
           LHH+WGKI
Sbjct: 795 LHHIWGKI 802


>Glyma18g11930.1 
          Length = 881

 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 51/104 (49%)

Query: 346 WKCVKRLICEGDLNSAYMEAXXXXXXXXXXXXXXKTGPVIESLSVKTVNVLFSTLASYLV 405
           W      +  GDL+SA+ E               KTGPVI+ LS +      + +  +L+
Sbjct: 745 WSNAMDALQVGDLDSAFAEVLSAGDDILLVKLMDKTGPVIDQLSSEVACETVNAIGQFLL 804

Query: 406 EANYFSTIMPWLQQVVDMSTIHGPNCISLSTDAKEQLLSAIQEA 449
           + N +   + W+QQV+++   +GP+   +  + K++LL  + EA
Sbjct: 805 DQNMYDICLSWIQQVLEIVLENGPDTFDIPMEVKKELLLNLHEA 848


>Glyma02g25230.1 
          Length = 877

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 50/94 (53%)

Query: 356 GDLNSAYMEAXXXXXXXXXXXXXXKTGPVIESLSVKTVNVLFSTLASYLVEANYFSTIMP 415
           GD++SA+ E               +TGPVI+ LS +    + + +  +L++ N +   + 
Sbjct: 751 GDIDSAFAEVLSTGDDILLVKIMDRTGPVIDQLSSEVACEIVNAIGQFLLDQNMYDICLS 810

Query: 416 WLQQVVDMSTIHGPNCISLSTDAKEQLLSAIQEA 449
           W+QQ++++   +GP+   +  + K++LL  + EA
Sbjct: 811 WIQQLLEIVLENGPDTFGIPMEVKKELLLNLHEA 844