Miyakogusa Predicted Gene

Lj2g3v0911670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0911670.1 tr|A9T9S5|A9T9S5_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_168816,44.35,5e-18,GIY-YIG type nucleases (URI
domain),UvrABC system subunit C, N-terminal,CUFF.35645.1
         (474 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g15450.1                                                       559   e-159
Glyma01g00630.1                                                       225   7e-59

>Glyma07g15450.1 
          Length = 426

 Score =  559 bits (1440), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 299/470 (63%), Positives = 348/470 (74%), Gaps = 59/470 (12%)

Query: 8   NRLKREQCDRTKHDSNFSHWKILIGPSDWEDFSKGKEGSARYRIHNLHKNSGSGVYELGI 67
           +R KREQC+RTKHDS+FSHWKILIGP DWED SKGKEG +RYRIHNL + SG GVYELGI
Sbjct: 6   SRFKREQCNRTKHDSSFSHWKILIGPRDWEDHSKGKEGCSRYRIHNLPQQSGPGVYELGI 65

Query: 68  AVSRSGLGREIYKLVAADPQRVVVVYLGEADNVRARLQCYGRSGAHLGNSGSDDASPQKG 127
           A + S   R+IYKLV     R+VVVYLG+ +NVR RL+ YG +G HL     +D+S    
Sbjct: 66  AAAASVSERKIYKLVP-HRHRIVVVYLGQTENVRERLRRYGGNGDHL-----EDSSLH-- 117

Query: 128 RPLFQEIFSQGFPIVYRWAPMQNKEDALRTEAQLLDTFDYAWNTSNNGTRRPDDILRMLN 187
             LFQ++FSQGF I+YRWAPMQNKEDALRTE +LL TFDYAWNT +N  RRPDDIL+ L+
Sbjct: 118 --LFQQVFSQGFSILYRWAPMQNKEDALRTETELLSTFDYAWNTRSNCVRRPDDILQKLH 175

Query: 188 KIASSTRTFSDVAKVLLPFTQRQVGIQIESSKLPLANDKSDDEADSGS--NNFLSRVFKF 245
           +IAS TRT SD+A+ LLPFTQ+QVGIQI+S KL        DEAD+GS  NN LSR+F F
Sbjct: 176 QIASGTRTLSDIARALLPFTQKQVGIQIKSIKL--------DEADNGSSYNNLLSRLFSF 227

Query: 246 NRSRPRIVQDITSGVI-QENAKICGVTLGDGSICRKPPAEKRLRCPEHKGMRTNVSTAKA 304
           NRSRPR+VQDIT  +  QEN KICGV LGDGSIC +PPAEKR+RCPEHKGMRTNVSTAKA
Sbjct: 228 NRSRPRLVQDITGAIQEQENGKICGVALGDGSICTRPPAEKRMRCPEHKGMRTNVSTAKA 287

Query: 305 -IKAPESKSVSYRYQNASHDIKDPPQTLVERPVDEIITQTN-ICGIVLDNGFPCRREPVK 362
            I AP S+         SHD++DPPQT+    VDE +T T+ ICGI+L +G  C R+PVK
Sbjct: 288 IIGAPMSE---------SHDLEDPPQTV----VDESLTNTDYICGILLSDGSTCTRQPVK 334

Query: 363 GRKRCQEHKGMRRNVSTAKVIKAPKSEDIVLPYEFPQTEGNGYRYQ-NVSHDVKDPPQAL 421
           GRKRC EHKG  R +  A +                QT+ NGY+YQ NVS+DV+DPPQ L
Sbjct: 335 GRKRCHEHKG--RRIRAASI----------------QTKDNGYKYQNNVSNDVEDPPQTL 376

Query: 422 VGSPVGEIINNTNICGIILDDGSTCRRQPVKGRKRCLEHKGRRIRASFHV 471
               V E I NTNICGIIL+DGSTC R PVKGRKRC EHKGRRIRASFH+
Sbjct: 377 ----VDESITNTNICGIILNDGSTCTRHPVKGRKRCHEHKGRRIRASFHI 422


>Glyma01g00630.1 
          Length = 198

 Score =  225 bits (574), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 123/217 (56%), Positives = 141/217 (64%), Gaps = 50/217 (23%)

Query: 29  ILIGPSDWEDFSKGKEGSARYRIHNLHKNSGSGVYELGIAVSRSGLGREIYKLVAADPQR 88
           ILIGP DWED SKGK+G                              REI+KL    P  
Sbjct: 1   ILIGPCDWEDHSKGKKG------------------------------REIHKLA---PNC 27

Query: 89  VVVVYLGEADNVRARLQCYGRSGAHLGNSGSDDASPQKGRPLFQEIFSQGFPIVYRWAPM 148
           +VVV+LG+A NVRARLQ YG +GAHL +S           PLF ++FSQ F I+YRWAPM
Sbjct: 28  IVVVHLGQAQNVRARLQRYGMTGAHLNDSSF---------PLFHQVFSQEFSILYRWAPM 78

Query: 149 QNKEDALRTEAQLLDTFDYAWNTSNNGTRRPDDILRMLNKIASSTRTFSDVAKVLLPFTQ 208
           QNKEDALRTE QLL TFDYAWNTSNNG RRPDDIL+ L++IAS TRT SD+A+ LLPFTQ
Sbjct: 79  QNKEDALRTETQLLSTFDYAWNTSNNGIRRPDDILQKLHQIASGTRTLSDMARALLPFTQ 138

Query: 209 RQVGIQIESSKLPLANDKSDDEADSGSNNFLSRVFKF 245
           +QVGIQI+S KL        DEAD+GS N L RVF F
Sbjct: 139 KQVGIQIKSIKL--------DEADNGSYNLLPRVFSF 167