Miyakogusa Predicted Gene

Lj2g3v0836940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0836940.1 Non Chatacterized Hit- tr|F6HT83|F6HT83_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,70.97,0.0001,PROKAR_LIPOPROTEIN,NULL,CUFF.35539.1
         (53 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g46730.1                                                        50   5e-07
Glyma04g15820.1                                                        49   1e-06
Glyma01g02140.1                                                        47   3e-06

>Glyma06g46730.1 
          Length = 247

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/29 (75%), Positives = 23/29 (79%)

Query: 23  GLDETLIKSITICKYQIGGGLVEGSDCFV 51
           GLDE LIKSI +CKY  GGGLVEG DC V
Sbjct: 110 GLDEALIKSIRVCKYNKGGGLVEGHDCSV 138


>Glyma04g15820.1 
          Length = 248

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/29 (75%), Positives = 23/29 (79%)

Query: 23  GLDETLIKSITICKYQIGGGLVEGSDCFV 51
           GLDE LIKSIT+CKY   GGLVEG DC V
Sbjct: 118 GLDEALIKSITVCKYNKRGGLVEGHDCSV 146


>Glyma01g02140.1 
          Length = 352

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/31 (67%), Positives = 25/31 (80%)

Query: 21  SCGLDETLIKSITICKYQIGGGLVEGSDCFV 51
           + GLDE LIKSIT+CKY+ G GLVE +DC V
Sbjct: 114 TIGLDEALIKSITVCKYKKGDGLVEVTDCSV 144