Miyakogusa Predicted Gene

Lj2g3v0636830.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0636830.1 Non Chatacterized Hit- tr|C6SZ62|C6SZ62_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.9639
PE=,91.71,0,Ssu72,RNA polymerase II subunit A; FAMILY NOT NAMED,RNA
polymerase II subunit A; seg,NULL,CUFF.35122.1
         (193 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g11980.1                                                       349   1e-96

>Glyma07g11980.1 
          Length = 193

 Score =  349 bits (895), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 165/193 (85%), Positives = 172/193 (89%)

Query: 1   MKFRYAMVCSSNQNRSMEAHFLLKRQGFDVCSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKFRYAMVCSSNQNRSMEAHFLLKRQGFDV SYGTGAHVKLPGPSLREPNVYDFGTPYKH
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHFLLKRQGFDVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MLDDLRRKDPELYKRNGILPMLKRNSNVKLAPQRWQENAADGSFDIVFTFEEKVFDMVIE 120
           M++DLRRKDP+LYKRNGI PMLKRNS VKLAPQRWQENAADGSFD+V TFEEKVFDMVIE
Sbjct: 61  MIEDLRRKDPDLYKRNGIFPMLKRNSTVKLAPQRWQENAADGSFDVVVTFEEKVFDMVIE 120

Query: 121 DLHNRDHVLLKTVLVINLEVKDNHEEAAVGARLTLDLCQXXXXXXXXXXXXXXIIGGFEK 180
           DLHNRDH LLKTVLVINLEVKDNH+EAAVGARLTLDLC+              II GFE 
Sbjct: 121 DLHNRDHALLKTVLVINLEVKDNHDEAAVGARLTLDLCREIEAAESWEESIDEIIAGFEN 180

Query: 181 QHRRKLLYSISFY 193
           +HRRKLLYSISFY
Sbjct: 181 KHRRKLLYSISFY 193