Miyakogusa Predicted Gene

Lj2g3v0636820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0636820.1 tr|I0Z3N6|I0Z3N6_9CHLO Translational machinery
component OS=Coccomyxa subellipsoidea C-169 PE=4
SV=1,46.39,0.00000000000009,39S RIBOSOMAL PROTEIN L18,
MITOCHONDRIAL,NULL; Translational machinery components,NULL; no
descripti,CUFF.35123.1
         (114 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g47730.1                                                       168   1e-42
Glyma14g00900.2                                                       167   3e-42
Glyma14g00900.1                                                       167   3e-42
Glyma08g25990.1                                                        57   6e-09
Glyma06g46620.2                                                        56   1e-08
Glyma06g46620.1                                                        56   1e-08
Glyma04g14470.2                                                        56   1e-08
Glyma04g14470.1                                                        56   1e-08
Glyma12g00280.1                                                        55   2e-08
Glyma03g24110.3                                                        49   1e-06
Glyma03g24110.2                                                        49   1e-06
Glyma03g24110.1                                                        49   1e-06

>Glyma02g47730.1 
          Length = 114

 Score =  168 bits (426), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/100 (84%), Positives = 87/100 (87%)

Query: 15  FLKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETKRDVAAAAKIGKILA 74
           FLKPYVL+MHFTNKYVSAQVIH            QEKALRSSLET RDVAAAAKIGKILA
Sbjct: 15  FLKPYVLKMHFTNKYVSAQVIHTPTATVASSASSQEKALRSSLETSRDVAAAAKIGKILA 74

Query: 75  ERLLLKEIPAVSVHLKREQKYHGKVKAVIDSLREAGVKLL 114
           ERLLLK+IPAVSVHLKREQKYHGKVKAVIDS+REAGVKLL
Sbjct: 75  ERLLLKDIPAVSVHLKREQKYHGKVKAVIDSIREAGVKLL 114


>Glyma14g00900.2 
          Length = 114

 Score =  167 bits (422), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 84/101 (83%), Positives = 86/101 (85%)

Query: 14  DFLKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETKRDVAAAAKIGKIL 73
            FLKPYVL+M+FTNKYVSAQVIH            QEKALRSSLET RDVAAAAKIGKIL
Sbjct: 14  QFLKPYVLKMNFTNKYVSAQVIHSPTATVASSASSQEKALRSSLETSRDVAAAAKIGKIL 73

Query: 74  AERLLLKEIPAVSVHLKREQKYHGKVKAVIDSLREAGVKLL 114
           AERLLLK IPAVSVHLKREQKYHGKVKAVIDSLREAGVKLL
Sbjct: 74  AERLLLKNIPAVSVHLKREQKYHGKVKAVIDSLREAGVKLL 114


>Glyma14g00900.1 
          Length = 114

 Score =  167 bits (422), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 84/101 (83%), Positives = 86/101 (85%)

Query: 14  DFLKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETKRDVAAAAKIGKIL 73
            FLKPYVL+M+FTNKYVSAQVIH            QEKALRSSLET RDVAAAAKIGKIL
Sbjct: 14  QFLKPYVLKMNFTNKYVSAQVIHSPTATVASSASSQEKALRSSLETSRDVAAAAKIGKIL 73

Query: 74  AERLLLKEIPAVSVHLKREQKYHGKVKAVIDSLREAGVKLL 114
           AERLLLK IPAVSVHLKREQKYHGKVKAVIDSLREAGVKLL
Sbjct: 74  AERLLLKNIPAVSVHLKREQKYHGKVKAVIDSLREAGVKLL 114


>Glyma08g25990.1 
          Length = 197

 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 57/97 (58%)

Query: 15  FLKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETKRDVAAAAKIGKILA 74
           +++P++L + F+ +++ A+V+H              K LR+SL +  D  A   +G ++A
Sbjct: 98  YMRPFLLNVFFSKRFIHAKVVHRGTSKVICVATTNAKDLRNSLPSLIDHNACRVVGNLIA 157

Query: 75  ERLLLKEIPAVSVHLKREQKYHGKVKAVIDSLREAGV 111
           ER +  ++ AV+   +++++  G++  V+D+++E G+
Sbjct: 158 ERSMEADVYAVAYEPRKDERIEGRLGIVLDTIKENGI 194


>Glyma06g46620.2 
          Length = 202

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 52/99 (52%)

Query: 15  FLKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETKRDVAAAAKIGKILA 74
           +++P+ L +  + ++VSA + H              K +++ L ++ D+ A   IG+ILA
Sbjct: 99  YMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACIAIGRILA 158

Query: 75  ERLLLKEIPAVSVHLKREQKYHGKVKAVIDSLREAGVKL 113
           ER    ++   S   +   K+ GK++AV+ SL + G+ +
Sbjct: 159 ERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNGIDI 197


>Glyma06g46620.1 
          Length = 202

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 52/99 (52%)

Query: 15  FLKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETKRDVAAAAKIGKILA 74
           +++P+ L +  + ++VSA + H              K +++ L ++ D+ A   IG+ILA
Sbjct: 99  YMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACIAIGRILA 158

Query: 75  ERLLLKEIPAVSVHLKREQKYHGKVKAVIDSLREAGVKL 113
           ER    ++   S   +   K+ GK++AV+ SL + G+ +
Sbjct: 159 ERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNGIDI 197


>Glyma04g14470.2 
          Length = 148

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 52/99 (52%)

Query: 15  FLKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETKRDVAAAAKIGKILA 74
           +++P+ L +  + ++VSA + H              K +++ L ++ D+ A   IG+ILA
Sbjct: 45  YMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACIAIGRILA 104

Query: 75  ERLLLKEIPAVSVHLKREQKYHGKVKAVIDSLREAGVKL 113
           ER    ++   S   +   K+ GK++AV+ SL + G+ +
Sbjct: 105 ERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNGIDI 143


>Glyma04g14470.1 
          Length = 187

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 52/99 (52%)

Query: 15  FLKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETKRDVAAAAKIGKILA 74
           +++P+ L +  + ++VSA + H              K +++ L ++ D+ A   IG+ILA
Sbjct: 84  YMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACIAIGRILA 143

Query: 75  ERLLLKEIPAVSVHLKREQKYHGKVKAVIDSLREAGVKL 113
           ER    ++   S   +   K+ GK++AV+ SL + G+ +
Sbjct: 144 ERAKEADVYTGSYTPRDRDKFEGKIRAVVQSLIDNGIDI 182


>Glyma12g00280.1 
          Length = 197

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 57/97 (58%)

Query: 15  FLKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETKRDVAAAAKIGKILA 74
           +++P++L + F+ +++ A+V+H              K LR+SL +  D  A   +G ++A
Sbjct: 98  YMRPFLLNVFFSKRFIHAKVVHRGTSKVICVATTNAKDLRNSLPSLIDHNACRVVGNLIA 157

Query: 75  ERLLLKEIPAVSVHLKREQKYHGKVKAVIDSLREAGV 111
           +R +  ++ AV+   +++++  G++  V+D+++E G+
Sbjct: 158 QRSMEADVYAVAYEPRKDERIEGRLGIVLDTIKENGI 194


>Glyma03g24110.3 
          Length = 128

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 12/111 (10%)

Query: 16  LKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETKR--DVAAAAKIGKIL 73
           +K YVLR+  + KY++A V+              E  ++ SLE  R  +  AAA +G++L
Sbjct: 4   MKRYVLRLFISLKYITANVVDRNNGRIVVSSSTAEHTIKESLECGRSCNAKAAAVVGEVL 63

Query: 74  AERL---LLKEIPAVSVHL-------KREQKYHGKVKAVIDSLREAGVKLL 114
           A RL    L E     +H        K+  K   KV AV+++L+  GVKL+
Sbjct: 64  ARRLKVEGLNEGEGRGIHANITKEVGKKGFKNQTKVWAVVNALKNNGVKLI 114


>Glyma03g24110.2 
          Length = 128

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 12/111 (10%)

Query: 16  LKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETKR--DVAAAAKIGKIL 73
           +K YVLR+  + KY++A V+              E  ++ SLE  R  +  AAA +G++L
Sbjct: 4   MKRYVLRLFISLKYITANVVDRNNGRIVVSSSTAEHTIKESLECGRSCNAKAAAVVGEVL 63

Query: 74  AERL---LLKEIPAVSVHL-------KREQKYHGKVKAVIDSLREAGVKLL 114
           A RL    L E     +H        K+  K   KV AV+++L+  GVKL+
Sbjct: 64  ARRLKVEGLNEGEGRGIHANITKEVGKKGFKNQTKVWAVVNALKNNGVKLI 114


>Glyma03g24110.1 
          Length = 128

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 12/111 (10%)

Query: 16  LKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETKR--DVAAAAKIGKIL 73
           +K YVLR+  + KY++A V+              E  ++ SLE  R  +  AAA +G++L
Sbjct: 4   MKRYVLRLFISLKYITANVVDRNNGRIVVSSSTAEHTIKESLECGRSCNAKAAAVVGEVL 63

Query: 74  AERL---LLKEIPAVSVHL-------KREQKYHGKVKAVIDSLREAGVKLL 114
           A RL    L E     +H        K+  K   KV AV+++L+  GVKL+
Sbjct: 64  ARRLKVEGLNEGEGRGIHANITKEVGKKGFKNQTKVWAVVNALKNNGVKLI 114