Miyakogusa Predicted Gene

Lj2g3v0621820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0621820.1 tr|D7KRJ0|D7KRJ0_ARALL RNA recognition
motif-containing protein OS=Arabidopsis lyrata subsp. lyrata
,82,4e-16,no description,Nucleotide-binding, alpha-beta plait; RRM,RNA
recognition motif domain; SUBFAMILY
NOT,NODE_48006_length_829_cov_50.727383.path2.1
         (61 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g34330.1                                                       109   6e-25
Glyma12g17150.1                                                        66   1e-11
Glyma06g41210.1                                                        65   2e-11
Glyma19g35670.1                                                        62   1e-10
Glyma09g29790.1                                                        61   2e-10
Glyma03g32960.1                                                        60   5e-10
Glyma03g35650.1                                                        58   3e-09
Glyma20g32820.1                                                        55   2e-08
Glyma10g34830.1                                                        51   3e-07
Glyma01g44260.1                                                        49   1e-06
Glyma01g44260.2                                                        49   1e-06
Glyma01g44260.5                                                        49   1e-06
Glyma01g44260.4                                                        49   1e-06
Glyma01g44260.3                                                        49   1e-06
Glyma15g04550.1                                                        49   1e-06
Glyma08g26900.1                                                        48   3e-06
Glyma06g01470.1                                                        46   9e-06
Glyma05g24540.2                                                        46   9e-06
Glyma05g24540.1                                                        46   9e-06
Glyma08g07730.1                                                        46   1e-05

>Glyma16g34330.1 
          Length = 180

 Score =  109 bits (273), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 51/58 (87%), Positives = 55/58 (94%)

Query: 1   MDKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRFQQNT 58
           MD++ANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSEL  R Q++T
Sbjct: 121 MDRIANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELAPRKQEDT 178


>Glyma12g17150.1 
          Length = 145

 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 39/59 (66%)

Query: 2   DKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRFQQNTMQ 60
           D+++   +GF F++YAT EE+ K IEGM GKFLDG VIF E A+PR    Q    N+ Q
Sbjct: 83  DRVSGYSKGFGFVQYATIEEAAKGIEGMDGKFLDGWVIFAEYARPRPPPGQSLNNNSPQ 141


>Glyma06g41210.1 
          Length = 145

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 39/60 (65%)

Query: 1   MDKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRFQQNTMQ 60
            D+++   +GF F++YAT E++ K IEGM GKFLDG VIF E A+PR    Q    N+ Q
Sbjct: 82  TDRVSGYSKGFGFVQYATIEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPGQPLNSNSSQ 141


>Glyma19g35670.1 
          Length = 139

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 37/47 (78%)

Query: 1   MDKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPR 47
           +D+ + R +GFAF+ Y T EE++KA EGM+ KFLDG VIFV+ AKPR
Sbjct: 66  IDRASGRSKGFAFVTYTTIEEAEKAREGMNAKFLDGWVIFVDPAKPR 112


>Glyma09g29790.1 
          Length = 43

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/32 (87%), Positives = 30/32 (93%)

Query: 1  MDKLANRPRGFAFLRYATEEESQKAIEGMHGK 32
          MD++AN PRGFAFLRYATEEESQKAIEGMH K
Sbjct: 12 MDRIANGPRGFAFLRYATEEESQKAIEGMHRK 43


>Glyma03g32960.1 
          Length = 139

 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query: 2   DKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPR 47
           D+ + R +GFAF+ Y T EE+++A EGM+ KFLDG VIFV+ AKPR
Sbjct: 67  DRASGRSKGFAFVTYTTIEEAERAREGMNAKFLDGWVIFVDPAKPR 112


>Glyma03g35650.1 
          Length = 130

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 38/50 (76%)

Query: 2   DKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELR 51
           D++++R +GF F+ +A+++E++ AIE M GK L+GRVIFV+ AKP    R
Sbjct: 63  DRVSDRSKGFGFVTFASQDEAENAIEDMKGKTLNGRVIFVDYAKPNINTR 112


>Glyma20g32820.1 
          Length = 375

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 3/57 (5%)

Query: 1   MDKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRFQQN 57
           MDK++ R +G+AF+ Y TEE +  A++ M+GK ++G +I V+VAKP      R+ +N
Sbjct: 319 MDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKPNPP---RYHRN 372


>Glyma10g34830.1 
          Length = 139

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 33/45 (73%)

Query: 2   DKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKP 46
           DK++ R +G+AF+ Y TEE +  A++ M+GK ++G +I V+ AKP
Sbjct: 81  DKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDAAKP 125


>Glyma01g44260.1 
          Length = 151

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 32/46 (69%)

Query: 1   MDKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKP 46
           ++K  NR +GF ++ +A EEE+ KA   M+GK L GRVI+V+V  P
Sbjct: 104 LNKAKNRSKGFGYVTFAKEEEACKAQIDMNGKILHGRVIYVDVQLP 149


>Glyma01g44260.2 
          Length = 83

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 32/47 (68%)

Query: 1  MDKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPR 47
          ++K  NR +GF ++ +A EEE+ KA   M+GK L GRVI+V+V  P 
Sbjct: 36 LNKAKNRSKGFGYVTFAKEEEACKAQIDMNGKILHGRVIYVDVQLPN 82


>Glyma01g44260.5 
          Length = 113

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 32/46 (69%)

Query: 1   MDKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKP 46
           ++K  NR +GF ++ +A EEE+ KA   M+GK L GRVI+V+V  P
Sbjct: 66  LNKAKNRSKGFGYVTFAKEEEACKAQIDMNGKILHGRVIYVDVQLP 111


>Glyma01g44260.4 
          Length = 113

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 32/46 (69%)

Query: 1   MDKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKP 46
           ++K  NR +GF ++ +A EEE+ KA   M+GK L GRVI+V+V  P
Sbjct: 66  LNKAKNRSKGFGYVTFAKEEEACKAQIDMNGKILHGRVIYVDVQLP 111


>Glyma01g44260.3 
          Length = 113

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 32/46 (69%)

Query: 1   MDKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKP 46
           ++K  NR +GF ++ +A EEE+ KA   M+GK L GRVI+V+V  P
Sbjct: 66  LNKAKNRSKGFGYVTFAKEEEACKAQIDMNGKILHGRVIYVDVQLP 111


>Glyma15g04550.1 
          Length = 74

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 32/44 (72%)

Query: 1  MDKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVA 44
          +D +  RP+GF F+ + +E E++KA+  M+G+ + GR+I VE+A
Sbjct: 28 LDPITKRPKGFGFVSFKSEIEAEKALRAMNGRIVSGRLILVELA 71


>Glyma08g26900.1 
          Length = 245

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 30/48 (62%)

Query: 1   MDKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRS 48
           MD+   R RGF F+ +AT E++  AI+GM G+ L GR I V  A  RS
Sbjct: 73  MDRETGRSRGFGFITFATSEDASSAIQGMDGQDLHGRRIRVNYATERS 120


>Glyma06g01470.1 
          Length = 182

 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 30/45 (66%)

Query: 2  DKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKP 46
          D+   R RGF F+ +ATE+  + AIEGM+G+ LDGR I V  A+ 
Sbjct: 42 DRETGRSRGFGFVTFATEQAMRDAIEGMNGQNLDGRNITVNEAQS 86


>Glyma05g24540.2 
          Length = 267

 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 30/44 (68%)

Query: 2  DKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAK 45
          D+     RGFAF+RY   +E+QKA+E + G+ +DGR I V+ AK
Sbjct: 50 DRRTGESRGFAFVRYKYADEAQKAVERLDGRMVDGREITVQFAK 93


>Glyma05g24540.1 
          Length = 267

 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 30/44 (68%)

Query: 2  DKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAK 45
          D+     RGFAF+RY   +E+QKA+E + G+ +DGR I V+ AK
Sbjct: 50 DRRTGESRGFAFVRYKYADEAQKAVERLDGRMVDGREITVQFAK 93


>Glyma08g07730.1 
          Length = 267

 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 30/44 (68%)

Query: 2  DKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAK 45
          D+     RGFAF+RY   +E+QKA+E + G+ +DGR I V+ AK
Sbjct: 50 DRRTGESRGFAFVRYKYADEAQKAVERLDGRMVDGREITVQFAK 93