Miyakogusa Predicted Gene

Lj2g3v0592880.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0592880.1 Non Chatacterized Hit- tr|B7FJ52|B7FJ52_MEDTR
Putative uncharacterized protein OS=Medicago truncatul,86.53,0,no
description,Nucleotide-binding, alpha-beta plait; RNA recognition
motif,RNA recognition motif dom,CUFF.34764.1
         (241 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g41400.1                                                       354   5e-98
Glyma19g43990.1                                                       353   1e-97
Glyma19g43990.2                                                       331   5e-91
Glyma14g38030.1                                                       219   3e-57
Glyma02g39890.1                                                       216   1e-56
Glyma06g37170.1                                                       101   7e-22
Glyma06g05690.1                                                        57   2e-08
Glyma02g09230.1                                                        50   2e-06
Glyma02g09230.3                                                        50   2e-06
Glyma20g30540.4                                                        50   3e-06
Glyma20g30540.1                                                        50   3e-06
Glyma02g09230.2                                                        49   4e-06

>Glyma03g41400.1 
          Length = 241

 Score =  354 bits (908), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 189/242 (78%), Positives = 197/242 (81%), Gaps = 2/242 (0%)

Query: 1   MTEANAGPETPQNNTIYXXXXXXXXXXXXXXXXXHAVFSQFGKILEVFAAKTLKHKGQAW 60
           M+E NA PE PQ+NTIY                 +AVF+QFGKILEV A KTLKHKGQAW
Sbjct: 1   MSEVNATPEIPQSNTIYINNLNEKIKIDELKKSLNAVFTQFGKILEVLAFKTLKHKGQAW 60

Query: 61  VVFEDLSSASNALRQMQGFPFYDKPMRIQYXXXXXXXXXXXXGTFVPREKRKRHEDKGNK 120
           VVFED SSASNALRQMQGFPFYDKPMRIQY            GTFVPREKRKRH+DK  K
Sbjct: 61  VVFEDASSASNALRQMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRKRHDDKA-K 119

Query: 121 KRKDQNDANLAGMGLNPAYPGAYGATPIPY-PGGLKSMVPEAPAPPNNILFIQNLPNETT 179
           KRKDQ+DANLAGMGLNPAY GAYGA P    PGG KSMVPEAPAPPNNILFIQNLPN++T
Sbjct: 120 KRKDQHDANLAGMGLNPAYAGAYGAAPAIAYPGGAKSMVPEAPAPPNNILFIQNLPNDST 179

Query: 180 PMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYA 239
           PMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQ LQGFKITPQNPMLITYA
Sbjct: 180 PMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQTLQGFKITPQNPMLITYA 239

Query: 240 KK 241
           KK
Sbjct: 240 KK 241


>Glyma19g43990.1 
          Length = 241

 Score =  353 bits (905), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 188/242 (77%), Positives = 197/242 (81%), Gaps = 2/242 (0%)

Query: 1   MTEANAGPETPQNNTIYXXXXXXXXXXXXXXXXXHAVFSQFGKILEVFAAKTLKHKGQAW 60
           M+E NA PE PQNNTIY                 +AVF+QFGKILEV A KTLKHKGQAW
Sbjct: 1   MSEVNATPEIPQNNTIYINNLNEKIKIDELKKSLNAVFTQFGKILEVLAFKTLKHKGQAW 60

Query: 61  VVFEDLSSASNALRQMQGFPFYDKPMRIQYXXXXXXXXXXXXGTFVPREKRKRHEDKGNK 120
           VVFED SSASNALRQMQGFPFYDKPMRIQY            GTFVPREKRKRH++K  K
Sbjct: 61  VVFEDASSASNALRQMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRKRHDEKA-K 119

Query: 121 KRKDQNDANLAGMGLNPAYPGAYGATPIPY-PGGLKSMVPEAPAPPNNILFIQNLPNETT 179
           KRKDQ+D+NLAGMGLNPAY GAYGA P    PGG KSMVPEAPAPPNNILFIQNLPN++T
Sbjct: 120 KRKDQHDSNLAGMGLNPAYAGAYGAAPAIAYPGGAKSMVPEAPAPPNNILFIQNLPNDST 179

Query: 180 PMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYA 239
           PMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQ LQGFKITPQNPMLITYA
Sbjct: 180 PMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQTLQGFKITPQNPMLITYA 239

Query: 240 KK 241
           KK
Sbjct: 240 KK 241


>Glyma19g43990.2 
          Length = 218

 Score =  331 bits (848), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 175/208 (84%), Positives = 183/208 (87%), Gaps = 2/208 (0%)

Query: 35  HAVFSQFGKILEVFAAKTLKHKGQAWVVFEDLSSASNALRQMQGFPFYDKPMRIQYXXXX 94
           +AVF+QFGKILEV A KTLKHKGQAWVVFED SSASNALRQMQGFPFYDKPMRIQY    
Sbjct: 12  NAVFTQFGKILEVLAFKTLKHKGQAWVVFEDASSASNALRQMQGFPFYDKPMRIQYAKTK 71

Query: 95  XXXXXXXXGTFVPREKRKRHEDKGNKKRKDQNDANLAGMGLNPAYPGAYGATPIPY-PGG 153
                   GTFVPREKRKRH++K  KKRKDQ+D+NLAGMGLNPAY GAYGA P    PGG
Sbjct: 72  SDIIAKADGTFVPREKRKRHDEKA-KKRKDQHDSNLAGMGLNPAYAGAYGAAPAIAYPGG 130

Query: 154 LKSMVPEAPAPPNNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDE 213
            KSMVPEAPAPPNNILFIQNLPN++TPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDE
Sbjct: 131 AKSMVPEAPAPPNNILFIQNLPNDSTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDE 190

Query: 214 MQSTVAMQALQGFKITPQNPMLITYAKK 241
           MQSTVAMQ LQGFKITPQNPMLITYAKK
Sbjct: 191 MQSTVAMQTLQGFKITPQNPMLITYAKK 218


>Glyma14g38030.1 
          Length = 232

 Score =  219 bits (557), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 122/235 (51%), Positives = 160/235 (68%), Gaps = 9/235 (3%)

Query: 9   ETPQNNTIYXXXXXXXXXXXXXXXXXHAVFSQFGKILEVFAAKTLKHKGQAWVVFEDLSS 68
           + P N TIY                 + +FSQ+G+IL+V A KT K +GQAWV F ++++
Sbjct: 5   DIPPNQTIYIKNINEKVKKDELKRSLYCLFSQYGRILDVIALKTPKLRGQAWVCFSEVTA 64

Query: 69  ASNALRQMQGFPFYDKPMRIQYXXXXXXXXXXXXGTFVPREKRKRHEDKGNKKRKDQNDA 128
           ASNA+RQMQ FPFYDKPMRIQY            GT+VPREK+K+ E+K  +KR+ + +A
Sbjct: 65  ASNAVRQMQNFPFYDKPMRIQYAKTKSDCIAKEEGTYVPREKKKKQEEKAERKRRAE-EA 123

Query: 129 NLAGM--GLNPAYPGAYGATPIPYPGGLKSMVPEAPAPPNNILFIQNLPNETTPMMLQML 186
             +G+  G + A  G   A+    PG  ++      A PNNILFI+NLP+ETT  ML+ML
Sbjct: 124 QQSGVANGTHSASNGGPTASFRQGPGAQET------AAPNNILFIENLPHETTGRMLEML 177

Query: 187 FLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYAKK 241
           F QYPGFKEVR++E KPGIAFV++ DE+QS++AMQAL GFKITPQNPM+IT+AKK
Sbjct: 178 FEQYPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALHGFKITPQNPMIITFAKK 232


>Glyma02g39890.1 
          Length = 232

 Score =  216 bits (551), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 121/235 (51%), Positives = 158/235 (67%), Gaps = 9/235 (3%)

Query: 9   ETPQNNTIYXXXXXXXXXXXXXXXXXHAVFSQFGKILEVFAAKTLKHKGQAWVVFEDLSS 68
           + P N TIY                 + +FSQ+G+IL+V A KT K +GQAWV F ++++
Sbjct: 5   DIPPNQTIYIKNLNEKVKKDELKRSLYCLFSQYGRILDVIALKTPKLRGQAWVCFSEVTA 64

Query: 69  ASNALRQMQGFPFYDKPMRIQYXXXXXXXXXXXXGTFVPREKRKRHEDKGNKKRKDQNDA 128
           ASNA+RQMQ FPFYDKPMRI Y            G+FVPREK+K+ E+K  +KR+ + +A
Sbjct: 65  ASNAVRQMQNFPFYDKPMRIHYAKTKSDCIAKEEGSFVPREKKKKQEEKAERKRRVE-EA 123

Query: 129 NLAGM--GLNPAYPGAYGATPIPYPGGLKSMVPEAPAPPNNILFIQNLPNETTPMMLQML 186
             +G+  G + A  G   A+    PG       +  A PNNILFI+NLP+ETT  ML+ML
Sbjct: 124 QQSGVANGTHSASNGGPTASFRQGPGA------QEAAAPNNILFIENLPHETTGRMLEML 177

Query: 187 FLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYAKK 241
           F QYPGFKEVR++E KPGIAFV++ DE+QS++AMQAL GFKITPQNPM+IT+AKK
Sbjct: 178 FEQYPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALHGFKITPQNPMIITFAKK 232


>Glyma06g37170.1 
          Length = 124

 Score =  101 bits (251), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 51/87 (58%), Positives = 56/87 (64%), Gaps = 1/87 (1%)

Query: 1  MTEANAGPETPQNNTIYXXXXXXXXXXX-XXXXXXHAVFSQFGKILEVFAAKTLKHKGQA 59
          M+E NA PE PQN  IY                  + VF+QF +ILEV A KTLKHKGQA
Sbjct: 1  MSEVNATPEIPQNKAIYINNLNEKIKIDGMLLKSLNTVFTQFREILEVLAFKTLKHKGQA 60

Query: 60 WVVFEDLSSASNALRQMQGFPFYDKPM 86
          WV FED SSASN +RQMQGFPFYDK M
Sbjct: 61 WVFFEDASSASNVVRQMQGFPFYDKLM 87


>Glyma06g05690.1 
          Length = 228

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 8/79 (10%)

Query: 163 APPNNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVETKP--------GIAFVEYGDEM 214
           A  +NILF+  LPN+ T   +  LF  + G+K++R+V  +P         + FVE+ D  
Sbjct: 117 AADSNILFVGGLPNDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMTLCFVEFVDSK 176

Query: 215 QSTVAMQALQGFKITPQNP 233
            +  AM+ALQG+K   + P
Sbjct: 177 CALTAMEALQGYKFDDKKP 195


>Glyma02g09230.1 
          Length = 242

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 19/113 (16%)

Query: 132 GMGLNPAYPGAYGATPIPYPGGLKSMVPEA-PAPPN--NILFIQNLPNETTPMMLQMLFL 188
           G G+N  Y G      +  PG      PE  P PP+  + L+++ LP+++T   +  +F 
Sbjct: 113 GRGVN--YGGQLPVDAVSRPG------PETVPLPPDASSTLYVEGLPSDSTRREVAHIFR 164

Query: 189 QYPGFKEVRMVETKPG--------IAFVEYGDEMQSTVAMQALQGFKITPQNP 233
            + G++EVR+V  +          + FV++ +   +  AM ALQG+K+   NP
Sbjct: 165 PFVGYREVRLVSKESKHRGGDPHYLCFVDFANPACAATAMSALQGYKVDELNP 217


>Glyma02g09230.3 
          Length = 213

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 10/82 (12%)

Query: 162 PAPPN--NILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVETKPG--------IAFVEYG 211
           P PP+  + L+++ LP+++T   +  +F  + G++EVR+V  +          + FV++ 
Sbjct: 107 PLPPDASSTLYVEGLPSDSTRREVAHIFRPFVGYREVRLVSKESKHRGGDPHYLCFVDFA 166

Query: 212 DEMQSTVAMQALQGFKITPQNP 233
           +   +  AM ALQG+K+   NP
Sbjct: 167 NPACAATAMSALQGYKVDELNP 188


>Glyma20g30540.4 
          Length = 252

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 17/116 (14%)

Query: 129 NLAGMGLNPAYPGAYGATPIPYPGGLKSMVPEA-PAPPN--NILFIQNLPNETTPMMLQM 185
           +LA  G N  Y G         PG      PE  P PP+  + L+++ LP+++T   +  
Sbjct: 118 DLARNGRNVNYGGQLTVDAASMPG------PETVPLPPDASSTLYVEGLPSDSTRREVAH 171

Query: 186 LFLQYPGFKEVRMVETKPG--------IAFVEYGDEMQSTVAMQALQGFKITPQNP 233
           +F  + G++EVR+V  +          + FV++ +   +  A+ ALQG+K+   NP
Sbjct: 172 IFRPFVGYREVRLVSKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDELNP 227


>Glyma20g30540.1 
          Length = 293

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 17/116 (14%)

Query: 129 NLAGMGLNPAYPGAYGATPIPYPGGLKSMVPE-APAPPN--NILFIQNLPNETTPMMLQM 185
           +LA  G N  Y G         PG      PE  P PP+  + L+++ LP+++T   +  
Sbjct: 152 DLARNGRNVNYGGQLTVDAASMPG------PETVPLPPDASSTLYVEGLPSDSTRREVAH 205

Query: 186 LFLQYPGFKEVRMVETKPG--------IAFVEYGDEMQSTVAMQALQGFKITPQNP 233
           +F  + G++EVR+V  +          + FV++ +   +  A+ ALQG+K+   NP
Sbjct: 206 IFRPFVGYREVRLVSKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDELNP 261


>Glyma02g09230.2 
          Length = 181

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 10/82 (12%)

Query: 162 PAPPN--NILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVETKPG--------IAFVEYG 211
           P PP+  + L+++ LP+++T   +  +F  + G++EVR+V  +          + FV++ 
Sbjct: 75  PLPPDASSTLYVEGLPSDSTRREVAHIFRPFVGYREVRLVSKESKHRGGDPHYLCFVDFA 134

Query: 212 DEMQSTVAMQALQGFKITPQNP 233
           +   +  AM ALQG+K+   NP
Sbjct: 135 NPACAATAMSALQGYKVDELNP 156