Miyakogusa Predicted Gene

Lj2g3v0533560.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0533560.1 Non Chatacterized Hit- tr|A9P0S0|A9P0S0_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,37.78,5e-18,RNA-binding domain, RBD,NULL; RRM_1,RNA recognition
motif domain; no description,Nucleotide-binding,,CUFF.34681.1
         (185 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g04880.1                                                       257   5e-69
Glyma02g02640.1                                                       255   2e-68
Glyma12g13160.1                                                       117   6e-27

>Glyma01g04880.1 
          Length = 218

 Score =  257 bits (656), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 135/187 (72%), Positives = 147/187 (78%), Gaps = 2/187 (1%)

Query: 1   MSRKRDR-PNVSRQ-ASKXXXXXXXXXXXXXXXXXXXXXXALVVMGLPIDCSVLDLKSRF 58
           MSRKRDR    SR  A+K                      A+VVMGLP DCSVLDLKSRF
Sbjct: 32  MSRKRDRSAYFSRHDAAKRRLPLPEPAEEETPTMRPAPPSAVVVMGLPQDCSVLDLKSRF 91

Query: 59  EIYGAISRIRIDRDAVGYITYRSKDSADAAIAAGVDPSFGITVNSKKVQVLWATDPLAMW 118
           EIYGAISRIRIDRDAVGYITYR+KDSADAAIAAG+DP+FGITVNSK VQVLWATDPLAMW
Sbjct: 92  EIYGAISRIRIDRDAVGYITYRTKDSADAAIAAGLDPTFGITVNSKMVQVLWATDPLAMW 151

Query: 119 REGVGNNKDKSSMSKLVRAEVPLRRHGRGNRLASSIGNTKSIQDRLGTSVLEAPFRGREI 178
           REGVGN+++K SMSKLVRAEVPL +HGRGNRLAS IGNTK  +   G+SVLE  F+GREI
Sbjct: 152 REGVGNSRNKGSMSKLVRAEVPLSKHGRGNRLASPIGNTKLSEASSGSSVLEVSFKGREI 211

Query: 179 VAYDDIL 185
           VAYDDIL
Sbjct: 212 VAYDDIL 218


>Glyma02g02640.1 
          Length = 143

 Score =  255 bits (652), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 123/143 (86%), Positives = 135/143 (94%)

Query: 43  MGLPIDCSVLDLKSRFEIYGAISRIRIDRDAVGYITYRSKDSADAAIAAGVDPSFGITVN 102
           MGLP DCSVLDLKSRFEIYGAISRIRIDRDAVGYITYR+KDSADA+IAA +DPSFGITVN
Sbjct: 1   MGLPQDCSVLDLKSRFEIYGAISRIRIDRDAVGYITYRTKDSADASIAADLDPSFGITVN 60

Query: 103 SKKVQVLWATDPLAMWREGVGNNKDKSSMSKLVRAEVPLRRHGRGNRLASSIGNTKSIQD 162
           SKKV+VLWATDPLAMWREGVGN++DKSSMSKLVRAEVPL +HGRGNRL+S+IGNTK  +D
Sbjct: 61  SKKVRVLWATDPLAMWREGVGNSRDKSSMSKLVRAEVPLSKHGRGNRLSSAIGNTKRSED 120

Query: 163 RLGTSVLEAPFRGREIVAYDDIL 185
             G+SVLE PF+GREIVAYDDIL
Sbjct: 121 SSGSSVLEVPFKGREIVAYDDIL 143


>Glyma12g13160.1 
          Length = 73

 Score =  117 bits (293), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 56/73 (76%), Positives = 63/73 (86%)

Query: 106 VQVLWATDPLAMWREGVGNNKDKSSMSKLVRAEVPLRRHGRGNRLASSIGNTKSIQDRLG 165
           VQVLWAT PLAMWREGVGN+++K SMSKLVRAEVPL +HGRGNRLAS IGNTK  +D  G
Sbjct: 1   VQVLWATYPLAMWREGVGNSRNKGSMSKLVRAEVPLSKHGRGNRLASPIGNTKRSKDSSG 60

Query: 166 TSVLEAPFRGREI 178
           +SVLE  F+GREI
Sbjct: 61  SSVLEVSFKGREI 73