Miyakogusa Predicted Gene

Lj2g3v0533480.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0533480.2 Non Chatacterized Hit- tr|F6HGJ5|F6HGJ5_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,68.06,1e-16,seg,NULL,CUFF.34672.2
         (72 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g28560.1                                                        72   1e-13
Glyma20g35730.1                                                        60   4e-10
Glyma10g31950.1                                                        57   4e-09

>Glyma09g28560.1 
          Length = 98

 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/53 (69%), Positives = 43/53 (81%)

Query: 20 LLDGHKRRAGVPSGSNXXXXXXXXATGSAIVDAMMEIAAASKMRASAIVKNED 72
          LLDGHKR+AG+PS S         ATG+AIVDAM+EIA+ASKMRASAIVKNE+
Sbjct: 18 LLDGHKRQAGMPSNSCGVRKRGRKATGAAIVDAMLEIASASKMRASAIVKNEE 70


>Glyma20g35730.1 
          Length = 130

 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/54 (64%), Positives = 39/54 (72%), Gaps = 2/54 (3%)

Query: 20 LLDGHKRR-AGVPSGSNXXXXXXXXATGSAIVDAMMEIAAASKMRASAIVKNED 72
          +LDGHKR    VPSGS         A G AIVDAM+EIAAASKMRA+AI+KNED
Sbjct: 18 MLDGHKRHPVVVPSGSRGRKQSRK-ANGDAIVDAMLEIAAASKMRATAILKNED 70


>Glyma10g31950.1 
          Length = 130

 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 38/53 (71%), Gaps = 2/53 (3%)

Query: 21 LDGHKRR-AGVPSGSNXXXXXXXXATGSAIVDAMMEIAAASKMRASAIVKNED 72
          L+GHKR    VPSGS         A G AIVDAM+EIAAASKMRA+AI+KNED
Sbjct: 19 LEGHKRHPVVVPSGSGGRKRSRK-ANGDAIVDAMLEIAAASKMRANAILKNED 70