Miyakogusa Predicted Gene

Lj2g3v0521160.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0521160.1 tr|F0SFV6|F0SFV6_PLABD Class I peptide chain
release factor OS=Planctomyces brasiliensis (strain
ATC,36.47,1e-18,PEPTIDYL-TRNA HYDROLASE DOMAIN PROTEIN,NULL; PEPTIDE
CHAIN RELEASE FACTOR,NULL; RF-1,Peptide chain r,CUFF.34649.1
         (317 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g33200.1                                                       267   1e-71
Glyma09g28400.1                                                       208   6e-54
Glyma19g41650.1                                                        55   9e-08
Glyma03g38240.1                                                        52   1e-06

>Glyma16g33200.1 
          Length = 185

 Score =  267 bits (682), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 133/182 (73%), Positives = 144/182 (79%), Gaps = 3/182 (1%)

Query: 139 DGSARGYLELTDDELMRQCEMGTFKSSGPGGQHRNKRESSVRIKHLPTGVIAQASEDRSQ 198
           +GS + YL L+D+ELMRQCEM TFK+SGPGGQHRNKRES+VR+KHLPTG+IAQASEDRSQ
Sbjct: 4   EGSEKCYLNLSDEELMRQCEMDTFKASGPGGQHRNKRESAVRLKHLPTGIIAQASEDRSQ 63

Query: 199 HKNXXXXXXXXXXXXXXKVRKTVDLDAYSPPRELLQILPPKSSIRGSDIGSQIGPNNSKF 258
           HKN              KVRKTVDL+AYSPPRELLQILPPKSSIRGSD GSQIGPNN KF
Sbjct: 64  HKNRASAINRLRSLIALKVRKTVDLEAYSPPRELLQILPPKSSIRGSDCGSQIGPNNPKF 123

Query: 259 AMGMQALLDLIFAVEGSISEAAKYLGLSTGAXXXXXXXXXXXXMEVNSLRASK---GMKP 315
           A GMQALLDLIFAVEGS+SEAAKYLGLSTGA             EVN LRA+K   GMKP
Sbjct: 124 ASGMQALLDLIFAVEGSVSEAAKYLGLSTGALSRLILSDDSLRKEVNDLRATKHEQGMKP 183

Query: 316 LK 317
           LK
Sbjct: 184 LK 185


>Glyma09g28400.1 
          Length = 250

 Score =  208 bits (529), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 107/156 (68%), Positives = 116/156 (74%), Gaps = 6/156 (3%)

Query: 168 GGQHRNKRESSVRIKHLPTGVIAQASEDRSQHKNXXXXXXXXXXXXXXKVRKTVDLDAYS 227
           GGQHRNKRES+VR+KHLP+G+IAQASEDRSQHKN              KVRKTVDL+AYS
Sbjct: 95  GGQHRNKRESAVRLKHLPSGIIAQASEDRSQHKNRASAINLLRSLIALKVRKTVDLEAYS 154

Query: 228 PPRELLQILPPKSSIRGSDIGSQIGPNNSKFA------MGMQALLDLIFAVEGSISEAAK 281
           PPRELL+ILPPKSSIRG D G QIGPNN KFA       GMQALLDLIFAV GS+SEAAK
Sbjct: 155 PPRELLRILPPKSSIRGPDYGPQIGPNNPKFASVCCVWHGMQALLDLIFAVAGSVSEAAK 214

Query: 282 YLGLSTGAXXXXXXXXXXXXMEVNSLRASKGMKPLK 317
           YLGLSTGA             EVN LRA+KGMKPL+
Sbjct: 215 YLGLSTGAVSRLILSDDSLRKEVNDLRATKGMKPLE 250


>Glyma19g41650.1 
          Length = 268

 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 29/40 (72%)

Query: 162 FKSSGPGGQHRNKRESSVRIKHLPTGVIAQASEDRSQHKN 201
           F++ G GGQH N  ES+VRI H+PTGV A    +RSQH+N
Sbjct: 140 FRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERSQHQN 179


>Glyma03g38240.1 
          Length = 358

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 30/43 (69%)

Query: 159 MGTFKSSGPGGQHRNKRESSVRIKHLPTGVIAQASEDRSQHKN 201
           + T++S G GGQH N   S+VR+ H+PTG++    ++RSQH N
Sbjct: 221 IDTYRSGGSGGQHANTTNSAVRVTHIPTGIMITIQDERSQHMN 263