Miyakogusa Predicted Gene
- Lj2g3v0486970.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0486970.1 Non Chatacterized Hit- tr|I1MQ84|I1MQ84_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.26345
PE,88.52,0,MMS1_N,NULL; seg,NULL; CLEAVAGE AND POLYADENYLATION
SPECIFICITY FACTOR SUBUNIT 1 (CLEAVAGE AND POLYA,CUFF.34661.1
(999 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma16g32890.1 1712 0.0
Glyma09g28030.1 1707 0.0
Glyma05g14320.1 98 5e-20
Glyma06g20420.1 96 2e-19
Glyma04g20320.1 93 2e-18
Glyma11g32640.1 87 7e-17
Glyma17g20640.1 84 9e-16
Glyma0022s00500.1 77 1e-13
Glyma0022s00510.1 65 3e-10
Glyma17g33200.1 64 7e-10
Glyma02g29550.1 57 1e-07
>Glyma16g32890.1
Length = 1448
Score = 1712 bits (4435), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 842/1001 (84%), Positives = 887/1001 (88%), Gaps = 10/1001 (0%)
Query: 1 MSFAAYKMMQWPTGVEHCASGFLTHSRADLASHTIIXXXXXXXXXXXXXXXRHPSPLPNL 60
MSFAAYKMMQ PTG+++CA+GFLTHSR+D + H LPNL
Sbjct: 1 MSFAAYKMMQCPTGIDNCAAGFLTHSRSDF----VPLQPDDLDAEWPSRPRHHVGSLPNL 56
Query: 61 VVTAANVLEVYIVRLQDRHPSKPS--SARGTLLDGISGASLELVCHYRLHGNVKSMAVLS 118
VVTAANVLEVY VRLQ+ P K + S RG LLDGI+GASLELVCHYRLHGNV++MAVLS
Sbjct: 57 VVTAANVLEVYAVRLQEDQPPKAAADSRRGALLDGIAGASLELVCHYRLHGNVETMAVLS 116
Query: 119 IGGGDTSKRRDSIILTFKDAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGREQFARG 178
IGGGD S+RRDSI+LTF DAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGREQFARG
Sbjct: 117 IGGGDVSRRRDSIMLTFADAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGREQFARG 176
Query: 179 PVVKVDPQGRCGGVLVYDLQMIILKTTQAGSGLVGEDDPLGSGGAVAARIDSSYMINLRD 238
PVVKVDPQGRCGGVL+YDLQMIILK TQAGSGLVGEDD LGS GAVAARI+SSYMINLRD
Sbjct: 177 PVVKVDPQGRCGGVLIYDLQMIILKATQAGSGLVGEDDALGSSGAVAARIESSYMINLRD 236
Query: 239 LDMRHVKDFTFVHGYIEPVMVILHERELSWAGRVAWKHHTCMISALSISTTLKQHPLIWS 298
LDMRHVKDFTFVHGYIEPVMVILHEREL+WAGRV+WKHHTCMISALSISTTLKQHPLIWS
Sbjct: 237 LDMRHVKDFTFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWS 296
Query: 299 AVNLPHDAYKLIAVPSPIGGVLVIAANTIHYHSQSASCALALNSYAVSLDS-SQEMPRSF 357
AVNLPHDAYKL+AVPSPIGGVLVI+ANTIHYHSQSASCALALNSYAV+LDS QE+PRS
Sbjct: 297 AVNLPHDAYKLLAVPSPIGGVLVISANTIHYHSQSASCALALNSYAVTLDSRCQEIPRSS 356
Query: 358 FNVELDAANATWLSNDVAXXXXXXXXXXXXXXIFDGRVVQRLDLSKSKASVLSSGITTIG 417
FNVELDAANATWL +DVA ++DGRVVQRLDLSKSKASVLSSGITTIG
Sbjct: 357 FNVELDAANATWLLSDVALLSTKTGELLLLTLVYDGRVVQRLDLSKSKASVLSSGITTIG 416
Query: 418 NSLFFLASRLGDSMLVQFSCGSSVSMLSSNLKEEVGDIEGDASSTKRLRRSPSDSLHDMV 477
NSLFFLASRLGDSMLVQFSCGS VSMLSSNLKEEVGDIE DA S KRLRRSPSD+L DMV
Sbjct: 417 NSLFFLASRLGDSMLVQFSCGSGVSMLSSNLKEEVGDIEADAPS-KRLRRSPSDALQDMV 475
Query: 478 SGEELSLYGSAPNRTESAQKSFSFAVRDSLINIGPLKDFSYGLRINADANATGIAKQSNY 537
SGEELSLYGSAPNRTESAQKSFSFAVRDSLIN+GPLKDFSYGLRINADANATGIAKQSNY
Sbjct: 476 SGEELSLYGSAPNRTESAQKSFSFAVRDSLINVGPLKDFSYGLRINADANATGIAKQSNY 535
Query: 538 ELVCCSGHGKNGSLCVLRQSIRPEVITEVELPGCKGIWTVYHKSARSHISDSSKLADDDD 597
ELVCCSGHGKNGSLCVLRQSIRPEVITEVELPGCKGIWTVYHKS RSH +DSSK+ADDDD
Sbjct: 536 ELVCCSGHGKNGSLCVLRQSIRPEVITEVELPGCKGIWTVYHKSTRSHNADSSKMADDDD 595
Query: 598 EYHAYLIISLEARTMVLETADLLSEVTESVDYYVQGKTLAAGNLFGRRRVIQVYERGARI 657
EYHAYLIISLEARTMVLETADLLSEVTESVDYYVQGKTLAAGNLFGR RVIQVYERGARI
Sbjct: 596 EYHAYLIISLEARTMVLETADLLSEVTESVDYYVQGKTLAAGNLFGRCRVIQVYERGARI 655
Query: 658 LDGSFMTQDIXXXXXXXXXXXXXXXALALSVSIADPYVLLRMSDGSIRLLVGDPSTCTIS 717
LDGSFMTQD+ A+ALSVSIADP+VLLRMSDGSIRLL+GDPSTCTIS
Sbjct: 656 LDGSFMTQDVSFGASNLESGSASDSAIALSVSIADPFVLLRMSDGSIRLLIGDPSTCTIS 715
Query: 718 VTXXXXXXXXXXXXXXCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAPQDHGDIY 777
VT CTLYHDKGPEPWLRKTSTDAWLSTGVGE IDGTDGA QDHGDIY
Sbjct: 716 VTSPASFESSKGSVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGETIDGTDGAAQDHGDIY 775
Query: 778 CVVCYENGNLEIFDVPNFSCVFSVENFMSGKSHLVDALTKEVAKDSQKGDKGSDAVANQG 837
CVVC++NGNLEIFDVPNF+CVFSVENFMSGKSHLVDAL KEV KDS++GD+ D V NQG
Sbjct: 776 CVVCFDNGNLEIFDVPNFNCVFSVENFMSGKSHLVDALMKEVLKDSKQGDR--DGVINQG 833
Query: 838 RKENVLNMKVVELAMQRWSGQHSRPFLFGILSDGTILCYHAYLYESPDGTSKVEDSVSAS 897
RKEN+ +MKVVELAMQRWSGQHSRPFLFGILSDGTILCYHAYLYESPD TSKVEDS SA
Sbjct: 834 RKENIPDMKVVELAMQRWSGQHSRPFLFGILSDGTILCYHAYLYESPDSTSKVEDSASAG 893
Query: 898 GPVDLSSTSVSRLRNLRFVRLPLDAYPREETSNGSPGQHITIFKNIGSYEGFFLSGSRPA 957
G + LSST+VSRLRNLRFVR+PLDAY RE+TSNG P Q ITIFKNIGSYEGFFLSGSRPA
Sbjct: 894 GSIGLSSTNVSRLRNLRFVRVPLDAYAREDTSNGPPCQQITIFKNIGSYEGFFLSGSRPA 953
Query: 958 WVMVLRERLRVHPQLCDGSILAFTVLHNVNCNHGLIYVTSQ 998
WVMVLRERLRVHPQLCDGSI+AFTVLHNVNCN GLIYVTSQ
Sbjct: 954 WVMVLRERLRVHPQLCDGSIVAFTVLHNVNCNQGLIYVTSQ 994
>Glyma09g28030.1
Length = 1450
Score = 1707 bits (4420), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 839/1002 (83%), Positives = 889/1002 (88%), Gaps = 10/1002 (0%)
Query: 1 MSFAAYKMMQWPTGVEHCASGFLTHSRADLASHTIIXXXXXXXXXXXXXXXRHPSPLPNL 60
MSFAAYKMMQ PTG+++CA+GFLTHSR+D + H PLPNL
Sbjct: 1 MSFAAYKMMQCPTGIDNCAAGFLTHSRSDFVP---LQPDDLDAAEWPSRPRHHVGPLPNL 57
Query: 61 VVTAANVLEVYIVRLQ-DRHPSKPS--SARGTLLDGISGASLELVCHYRLHGNVKSMAVL 117
VVTAANVLEVY VRLQ D+ P S S RGTLLDGI+GASLEL CHYRLHGNV++MAVL
Sbjct: 58 VVTAANVLEVYAVRLQEDQQPKDASDDSRRGTLLDGIAGASLELECHYRLHGNVETMAVL 117
Query: 118 SIGGGDTSKRRDSIILTFKDAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGREQFAR 177
SIGGGD S++RDSIILTF DAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGREQFAR
Sbjct: 118 SIGGGDVSRKRDSIILTFADAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGREQFAR 177
Query: 178 GPVVKVDPQGRCGGVLVYDLQMIILKTTQAGSGLVGEDDPLGSGGAVAARIDSSYMINLR 237
GPVVK+DPQGRCGGVL+YDLQMIILK TQ GSGLVG+DD GS GAVAARI+SSYMINLR
Sbjct: 178 GPVVKIDPQGRCGGVLIYDLQMIILKATQVGSGLVGDDDAFGSSGAVAARIESSYMINLR 237
Query: 238 DLDMRHVKDFTFVHGYIEPVMVILHERELSWAGRVAWKHHTCMISALSISTTLKQHPLIW 297
DLDMRHVKDFTFV+GYIEPVMVILHEREL+WAGRV+W HHTCMISALSISTTLKQHPLIW
Sbjct: 238 DLDMRHVKDFTFVYGYIEPVMVILHERELTWAGRVSWTHHTCMISALSISTTLKQHPLIW 297
Query: 298 SAVNLPHDAYKLIAVPSPIGGVLVIAANTIHYHSQSASCALALNSYAVSLDS-SQEMPRS 356
SAVNLPHDAYKL+AVPSPIGGVLVI ANTIHYHSQSASCALALN+YAV+LDS QE+PRS
Sbjct: 298 SAVNLPHDAYKLLAVPSPIGGVLVIGANTIHYHSQSASCALALNNYAVTLDSRCQEIPRS 357
Query: 357 FFNVELDAANATWLSNDVAXXXXXXXXXXXXXXIFDGRVVQRLDLSKSKASVLSSGITTI 416
FNVELDAANATWL +DVA ++DGRVVQRLDLSKSKASVLSSGITTI
Sbjct: 358 SFNVELDAANATWLLSDVALLSTKTGELLLLMLVYDGRVVQRLDLSKSKASVLSSGITTI 417
Query: 417 GNSLFFLASRLGDSMLVQFSCGSSVSMLSSNLKEEVGDIEGDASSTKRLRRSPSDSLHDM 476
GNSLFFLASRLGDSMLVQFSCGS VSM+SSNLKEEVGDIE DA S KRLRRSPSD+L DM
Sbjct: 418 GNSLFFLASRLGDSMLVQFSCGSGVSMMSSNLKEEVGDIEVDAPS-KRLRRSPSDALQDM 476
Query: 477 VSGEELSLYGSAPNRTESAQKSFSFAVRDSLINIGPLKDFSYGLRINADANATGIAKQSN 536
VSGEELSLYGSA NRTESAQKSFSFAVRDSLIN+GPLKDFSYGLRINADANATGIAKQSN
Sbjct: 477 VSGEELSLYGSATNRTESAQKSFSFAVRDSLINVGPLKDFSYGLRINADANATGIAKQSN 536
Query: 537 YELVCCSGHGKNGSLCVLRQSIRPEVITEVELPGCKGIWTVYHKSARSHISDSSKLADDD 596
YELVCCSGHGKNGSLCVLRQSIRPEVITEVELPGCKGIWTVYHKS RSH +DSSK+ADDD
Sbjct: 537 YELVCCSGHGKNGSLCVLRQSIRPEVITEVELPGCKGIWTVYHKSTRSHNADSSKMADDD 596
Query: 597 DEYHAYLIISLEARTMVLETADLLSEVTESVDYYVQGKTLAAGNLFGRRRVIQVYERGAR 656
DEYHAYLIISLEARTMVLETADLLSEVTESVDYYVQGKTLAAGNLFGRRRVIQVYERGAR
Sbjct: 597 DEYHAYLIISLEARTMVLETADLLSEVTESVDYYVQGKTLAAGNLFGRRRVIQVYERGAR 656
Query: 657 ILDGSFMTQDIXXXXXXXXXXXXXXXALALSVSIADPYVLLRMSDGSIRLLVGDPSTCTI 716
ILDGSFMTQD+ A+ALSVSIADP+VLLRMSDGSIRLL+GDPSTCTI
Sbjct: 657 ILDGSFMTQDVSFGASNSESGSASESAIALSVSIADPFVLLRMSDGSIRLLIGDPSTCTI 716
Query: 717 SVTXXXXXXXXXXXXXXCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAPQDHGDI 776
SVT CTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGA QDHGDI
Sbjct: 717 SVTSPASFESSKGSVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAAQDHGDI 776
Query: 777 YCVVCYENGNLEIFDVPNFSCVFSVENFMSGKSHLVDALTKEVAKDSQKGDKGSDAVANQ 836
YCVVC++NGNLEIFD+PNF+CVFSVENFMSGKSHLVDAL KEV KDS++GD+ D V NQ
Sbjct: 777 YCVVCFDNGNLEIFDIPNFNCVFSVENFMSGKSHLVDALMKEVLKDSKQGDR--DGVVNQ 834
Query: 837 GRKENVLNMKVVELAMQRWSGQHSRPFLFGILSDGTILCYHAYLYESPDGTSKVEDSVSA 896
GRK+N+ NMKVVELAMQRWSGQHSRPFLFGILSDGTILCYHAYLYESPDGTSKVEDS SA
Sbjct: 835 GRKDNIPNMKVVELAMQRWSGQHSRPFLFGILSDGTILCYHAYLYESPDGTSKVEDSASA 894
Query: 897 SGPVDLSSTSVSRLRNLRFVRLPLDAYPREETSNGSPGQHITIFKNIGSYEGFFLSGSRP 956
G + LSST+VSRLRNLRFVR+PLDAYPRE+TSNGSP Q ITIFKNIGSY+GFFLSGSRP
Sbjct: 895 GGSIGLSSTNVSRLRNLRFVRVPLDAYPREDTSNGSPCQQITIFKNIGSYQGFFLSGSRP 954
Query: 957 AWVMVLRERLRVHPQLCDGSILAFTVLHNVNCNHGLIYVTSQ 998
AWVMVLRERLRVHPQLCDGSI+AFTVLHNVNCNHGLIYVTSQ
Sbjct: 955 AWVMVLRERLRVHPQLCDGSIVAFTVLHNVNCNHGLIYVTSQ 996
>Glyma05g14320.1
Length = 169
Score = 97.8 bits (242), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 81/154 (52%), Gaps = 16/154 (10%)
Query: 8 MMQWPTGVEHCASGFLTHSRADLASHTIIXXXXXXXXXXXXXXXRHPSPLPNLVVTAANV 67
MMQ P +++CA GFLTHSR+D + H LPNLVVTAANV
Sbjct: 1 MMQCPIDIDNCAVGFLTHSRSDFVPLQL----DDIDVEWPSCPCHHVGSLPNLVVTAANV 56
Query: 68 LEVYIVRLQDRHPSKPS--SARGTLLDGISGASLELVCHYR---------LHGNVKSMAV 116
LEVY VRLQ+ P K + S G LLDGI+GASLELVCHYR + V
Sbjct: 57 LEVYTVRLQEDQPPKAAADSCGGALLDGIAGASLELVCHYRSPLCPLTSETDNCSNTWVV 116
Query: 117 LS-IGGGDTSKRRDSIILTFKDAKISVLEYDDSI 149
+S I ++ K RD L AK+ V D+S+
Sbjct: 117 ISKIISTESIKHRDKAALIAYIAKLEVELMDNSL 150
>Glyma06g20420.1
Length = 190
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 68/127 (53%), Gaps = 35/127 (27%)
Query: 204 TTQAGSGLVGEDDPLGSGGAVAARIDSSYMINLRDLDMRHVKDFTFVHGYIEPVMVILHE 263
Q GSGLVGEDD LGS AVAARI+SSYMINL DLDMRHVK FTFVH
Sbjct: 84 CCQIGSGLVGEDDALGSSRAVAARIESSYMINLCDLDMRHVKYFTFVH------------ 131
Query: 264 RELSWAGRVAWKHHTCMISALSISTTLKQHPLIWSAVNLPHDAYKLIAVPSPIGGVLVIA 323
+ IS TL + W V H L + +PIGG++VI+
Sbjct: 132 --------------------VCISITLIFNCAEWCCV--IHKP-SLANMSAPIGGIVVIS 168
Query: 324 ANTIHYH 330
ANTIHYH
Sbjct: 169 ANTIHYH 175
>Glyma04g20320.1
Length = 207
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 64/107 (59%), Gaps = 15/107 (14%)
Query: 1 MSFAAYKMMQWPTGVEHCASGFLTHSRADLASHTIIXXXXXXXXXXXXXXXRHPSPLPNL 60
MSFAAYKMMQ PT +++CA+GFLTHSR SH ++ H LPNL
Sbjct: 1 MSFAAYKMMQCPTDIDNCATGFLTHSR----SHFVLLQPDDIDAEWPSRPRHHVGSLPNL 56
Query: 61 VVTAANVLEVYIVRLQDRHPSKPSSARGTLLDGISGASLELVCHYRL 107
VVT VLEVY+ + S RG LLDGI+GASLELVCHYR
Sbjct: 57 VVT---VLEVYV--------AAADSRRGALLDGIAGASLELVCHYRF 92
>Glyma11g32640.1
Length = 113
Score = 87.4 bits (215), Expect = 7e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 56/91 (61%), Gaps = 19/91 (20%)
Query: 793 PNFSCVFSVENFMSGKSHLVDALTKEVAKDSQKGDKGSDAVANQGRKENVLNMKVVELAM 852
PN F++ENF+ GKSH DA+ K+V KDS++GD+ + L M
Sbjct: 42 PNSIVSFAMENFIFGKSHFGDAMMKDVMKDSKEGDRDA-------------------LVM 82
Query: 853 QRWSGQHSRPFLFGILSDGTILCYHAYLYES 883
QRWSGQ SRPF+FGILS G+I+ Y YLYES
Sbjct: 83 QRWSGQLSRPFVFGILSYGSIVRYQGYLYES 113
>Glyma17g20640.1
Length = 128
Score = 84.0 bits (206), Expect = 9e-16, Method: Composition-based stats.
Identities = 40/48 (83%), Positives = 44/48 (91%)
Query: 253 YIEPVMVILHERELSWAGRVAWKHHTCMISALSISTTLKQHPLIWSAV 300
YIEPVMVILHEREL+WAGRV+WKHHTC IS +SIS TLKQHPLIW A+
Sbjct: 1 YIEPVMVILHERELTWAGRVSWKHHTCTISTISISITLKQHPLIWLAI 48
>Glyma0022s00500.1
Length = 45
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 38/44 (86%)
Query: 208 GSGLVGEDDPLGSGGAVAARIDSSYMINLRDLDMRHVKDFTFVH 251
G GLVGEDD LGS GAVA RI+SSYMINL DLDMRHVK FTFVH
Sbjct: 1 GFGLVGEDDALGSSGAVATRIESSYMINLHDLDMRHVKYFTFVH 44
>Glyma0022s00510.1
Length = 109
Score = 65.1 bits (157), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 600 HAYLIISLEARTMVLETADLLSEVTESVDYYVQGKTLAAGNLFG 643
HA LI+ +VLET DLLSEVT+SVDYYVQGKTLA GNLFG
Sbjct: 65 HASLIVIFYFLMVVLETTDLLSEVTKSVDYYVQGKTLAGGNLFG 108
>Glyma17g33200.1
Length = 96
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 60/103 (58%), Gaps = 9/103 (8%)
Query: 1 MSFAAYKMMQWPTGVEHCASGFLTHSRADLASHTIIXXXXXXXXXXXXXXXRHPSPLPNL 60
MSFAAYKMMQ PT +++CA+GFLTHSR S+ ++ H LPNL
Sbjct: 1 MSFAAYKMMQCPTDIDNCAAGFLTHSR----SNFVLLQPDDIDAEWPSRPRHHVGSLPNL 56
Query: 61 VVTAANVLEVYIVRLQDRHPSKPS--SARGTLLDGISGASLEL 101
VVT VY+VRL++ P K + S G LLDGI ASLEL
Sbjct: 57 VVTVLK---VYVVRLEEDQPPKAAVDSRCGALLDGIVEASLEL 96
>Glyma02g29550.1
Length = 153
Score = 56.6 bits (135), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/36 (77%), Positives = 29/36 (80%)
Query: 499 FSFAVRDSLINIGPLKDFSYGLRINADANATGIAKQ 534
F FA+R SLINI PLKDF GLRIN ANATGIAKQ
Sbjct: 68 FLFAMRGSLINIYPLKDFLNGLRINVHANATGIAKQ 103