Miyakogusa Predicted Gene
- Lj2g3v0435440.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0435440.1 Non Chatacterized Hit- tr|I1NGP9|I1NGP9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.33371
PE,80.94,0,RRM_1,RNA recognition motif domain; RNA recognition
motif,RNA recognition motif domain; no descripti,CUFF.34828.1
(379 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma20g29460.1 442 e-124
Glyma10g38400.1 425 e-119
Glyma03g01920.1 210 3e-54
Glyma07g05900.1 191 1e-48
Glyma16g02500.1 190 2e-48
Glyma03g01920.3 150 2e-36
Glyma03g01920.2 150 2e-36
Glyma07g05900.2 137 3e-32
Glyma03g42020.1 89 1e-17
Glyma10g07380.1 74 4e-13
>Glyma20g29460.1
Length = 376
Score = 442 bits (1138), Expect = e-124, Method: Compositional matrix adjust.
Identities = 250/383 (65%), Positives = 264/383 (68%), Gaps = 16/383 (4%)
Query: 1 MRSIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMXXXXXXXXXXXXXXXXXF 60
MR IFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYM F
Sbjct: 6 MRPIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDAEAAIRALDRVEF 65
Query: 61 GRKGRRLRVEWTKHERGIXXXXXXXXXXXXXXXXXXLFVINFDTFHTRTRDLERHFEPYG 120
GRKGRRLRVEWTKHERG+ LFVINFDT+HTRTRDLERHFEPYG
Sbjct: 66 GRKGRRLRVEWTKHERGVRKPASSRRSSANGRPSKTLFVINFDTYHTRTRDLERHFEPYG 125
Query: 121 KIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGYSPEXX 180
KI SVRIRRNFAFVQYESEDDA +ALEATN SKLLDRVISVEFA KDDDDRRNGYSPE
Sbjct: 126 KIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRNGYSPERG 185
Query: 181 XXXXXXXXXXXXXXXXXXXXERGSPDYGRGASPYKRERSSPDY--XXXXXXXXXXXXXXX 238
ERGSPDYGRG SPY+RER SPDY
Sbjct: 186 RDRHRDRSRDGRRSPSPYRRERGSPDYGRGPSPYQRERGSPDYGRDRDRSRSRSPPRRER 245
Query: 239 XXXXHGRRSPSPYRRERDGSDLVRDSSRSPFHKERGRTDR--SSSLSPKRRGRTSPQNGG 296
+GRRS SP+RRER+GS+ VRDSSRSP+HKERGRTD S S SP+ RG+ SPQNG
Sbjct: 246 ASPAYGRRSLSPHRREREGSEPVRDSSRSPYHKERGRTDHGISPSQSPEGRGKKSPQNGH 305
Query: 297 DSSRSPYDPVKATSPENGEIKHSPDARGNPSDYNGYGGGSPDNMRXXXXXXXXXXXXRDS 356
SSRSP+D K TSPENG SPD +GNPS YNGY GGSP+NM RDS
Sbjct: 306 GSSRSPHDTGK-TSPENGLGSGSPDEKGNPSPYNGY-GGSPNNM----------PDPRDS 353
Query: 357 PNYGGPESPMHERYRSQSPPAEE 379
PNYGGPESPMHERYRSQSPPAEE
Sbjct: 354 PNYGGPESPMHERYRSQSPPAEE 376
>Glyma10g38400.1
Length = 466
Score = 425 bits (1092), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/372 (64%), Positives = 253/372 (68%), Gaps = 14/372 (3%)
Query: 1 MRSIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMXXXXXXXXXXXXXXXXXF 60
MR IFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYM F
Sbjct: 75 MRPIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDAEAAIRALDRVEF 134
Query: 61 GRKGRRLRVEWTKHERGIXXXXXXXXXXXXXXXXXXLFVINFDTFHTRTRDLERHFEPYG 120
GRKGRRLRVEWTKHERG+ LFVINFDT+HTRTRDLERHFEPYG
Sbjct: 135 GRKGRRLRVEWTKHERGVRRPASSRRSSAIGRPSKTLFVINFDTYHTRTRDLERHFEPYG 194
Query: 121 KIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGYSPEXX 180
KI SVRIRRNFAFVQYESEDDA +ALEATN SKLLDRVISVEFA KDDDDRRNGYSPE
Sbjct: 195 KIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRNGYSPERG 254
Query: 181 XXXXXXXXXXXXXXXXXXXXERGSPDYGRGASPYKRERSSPDYXXXXXXXXXXXXXXXXX 240
ERGSPDYGRG SPY+RER SPDY
Sbjct: 255 RDRQRDRSRDGRRSPSPYRKERGSPDYGRGPSPYQRERGSPDYGRDRSRSRSPPRRERAS 314
Query: 241 XXHGRRSPSPYRRERDGSDLVRDSSRSPFHKERGRTDR--SSSLSPKRRGRTSPQNGGDS 298
+GRRS SPYRRER+GS+ VRDSSRSP+HKERGRTD S S SP+ RGR SPQNG S
Sbjct: 315 PAYGRRSISPYRREREGSEPVRDSSRSPYHKERGRTDHGISPSQSPEGRGRKSPQNGHGS 374
Query: 299 SRSPYDPVKATSPENGEIKHSPDARGNPSDYNGYGGGSPDNMRXXXXXXXXXXXXRDSPN 358
SRSP D K TSPENG SPD +GNPS YNGY GGSP+ + RDSPN
Sbjct: 375 SRSPRDTGK-TSPENGHGSGSPDEKGNPSPYNGY-GGSPNTV----------PDPRDSPN 422
Query: 359 YGGPESPMHERY 370
YGGPESPMHERY
Sbjct: 423 YGGPESPMHERY 434
>Glyma03g01920.1
Length = 252
Score = 210 bits (534), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 120/228 (52%), Positives = 143/228 (62%), Gaps = 5/228 (2%)
Query: 1 MRSIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMXXXXXXXXXXXXXXXXXF 60
M+ +FCGN ++DARQS++ERLFRRYGKVDRVDMKSGFAF+YM F
Sbjct: 1 MKPVFCGNLDFDARQSDVERLFRRYGKVDRVDMKSGFAFVYMEDERDAEYAIRRLDRTEF 60
Query: 61 GRKGRRLRVEWTKHERGIXXXXXXXXXXXXXXX-XXXLFVINFDTFHTRTRDLERHFEPY 119
GRKGRR+RVEWTK ER LFVINFD + RTRDLERHF+ Y
Sbjct: 61 GRKGRRIRVEWTKQERDSRRSGGDSRKSSSNSRPSKTLFVINFDPVNARTRDLERHFDSY 120
Query: 120 GKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAA--KDDDDRRNGYSP 177
GKI ++RIRRNFAF+Q+ES++DA +ALEATN SK +DRVI+VE+A DD DRRNGYSP
Sbjct: 121 GKILNIRIRRNFAFIQFESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDRRNGYSP 180
Query: 178 EXXXXXXXXXXXXXXXXXXXXXXERGSPDYGRGASPYKR--ERSSPDY 223
+ RGSPDYG G++P R R SP Y
Sbjct: 181 DRRGHDSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPSSRPEPRGSPKY 228
>Glyma07g05900.1
Length = 259
Score = 191 bits (484), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 113/232 (48%), Positives = 132/232 (56%), Gaps = 22/232 (9%)
Query: 1 MRSIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMXXXXXXXXXXXXXXXXXF 60
MR IF GN EYD RQSELERLF +YG++DRVDMKSGFAF+Y F
Sbjct: 1 MRPIFAGNLEYDTRQSELERLFAKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVPF 60
Query: 61 GRKGRRLRVEWTKHERGIXXXXXXXXXXXXXXXXXXLFVINFDTFHTRTRDLERHFEPYG 120
G + RRL VEW + ERG LFVINFD TR RD+E+HFEPYG
Sbjct: 61 GHEKRRLSVEWARGERG----RHHDGSKANQKPTKTLFVINFDPIRTRVRDIEKHFEPYG 116
Query: 121 KIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGY-SPEX 179
+ VRIRRNFAFVQ+E+++DA KALE TN SK+LDRV+SVE+A +DD +R + Y SP
Sbjct: 117 NVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNYDSPR- 175
Query: 180 XXXXXXXXXXXXXXXXXXXXXERGSPDYGRGASP-YKR-------ERSSPDY 223
R SPDYGR SP Y R R SPDY
Sbjct: 176 --------RRGGYERSPSPYHRRPSPDYGRPRSPVYDRYNGGGPDMRRSPDY 219
>Glyma16g02500.1
Length = 264
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/232 (48%), Positives = 132/232 (56%), Gaps = 23/232 (9%)
Query: 1 MRSIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMXXXXXXXXXXXXXXXXXF 60
MR IF GN EYD RQSELERLF +YG++DRVDMKSGFAF+Y F
Sbjct: 1 MRPIFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVPF 60
Query: 61 GRKGRRLRVEWTKHERGIXXXXXXXXXXXXXXXXXXLFVINFDTFHTRTRDLERHFEPYG 120
G + RRL VEW + ERG LFVINFD TR RD+E+HFEPYG
Sbjct: 61 GHEKRRLSVEWARGERG----RHRDGSKANQKPTKTLFVINFDPIRTRVRDIEKHFEPYG 116
Query: 121 KIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGY-SPEX 179
+ VRIRRNFAFVQ+E+++DA KA+E TN SK+LDRV+SVE+A +DD +R + Y SP
Sbjct: 117 NVLHVRIRRNFAFVQFETQEDATKAIECTNMSKILDRVVSVEYALRDDGERGDNYDSPR- 175
Query: 180 XXXXXXXXXXXXXXXXXXXXXERGSPDYGRGASP-YKR-------ERSSPDY 223
R SPDYGR SP Y R R SPDY
Sbjct: 176 ---------RGGYERSPSPYHRRPSPDYGRPRSPVYDRYNGGGPDRRRSPDY 218
>Glyma03g01920.3
Length = 241
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 118/214 (55%), Gaps = 6/214 (2%)
Query: 15 QSELERLFRRYGKVDRVDMKSGFAFIYMXXXXXXXXXXXXXXXXXFGRKGRRLRVEWTKH 74
Q + +F+ D + +GFAF+YM FGRKGRR+RVEWTK
Sbjct: 5 QCSISNMFQHRNHDDFATV-AGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQ 63
Query: 75 ERGIXXXXXXXXXXXXXXX-XXXLFVINFDTFHTRTRDLERHFEPYGKIASVRIRRNFAF 133
ER LFVINFD + RTRDLERHF+ YGKI ++RIRRNFAF
Sbjct: 64 ERDSRRSGGDSRKSSSNSRPSKTLFVINFDPVNARTRDLERHFDSYGKILNIRIRRNFAF 123
Query: 134 VQYESEDDACKALEATNNSKLLDRVISVEFAA--KDDDDRRNGYSPEXXXXXXXXXXXXX 191
+Q+ES++DA +ALEATN SK +DRVI+VE+A DD DRRNGYSP+
Sbjct: 124 IQFESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDRRNGYSPDRRGHDSPDGRYGR 183
Query: 192 XXXXXXXXXERGSPDYGRGASPYKR--ERSSPDY 223
RGSPDYG G++P R R SP Y
Sbjct: 184 GRSPSPYRRGRGSPDYGHGSNPSSRPEPRGSPKY 217
>Glyma03g01920.2
Length = 241
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 118/214 (55%), Gaps = 6/214 (2%)
Query: 15 QSELERLFRRYGKVDRVDMKSGFAFIYMXXXXXXXXXXXXXXXXXFGRKGRRLRVEWTKH 74
Q + +F+ D + +GFAF+YM FGRKGRR+RVEWTK
Sbjct: 5 QCSISNMFQHRNHDDFATV-AGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQ 63
Query: 75 ERGIXXXXXXXXXXXXXXX-XXXLFVINFDTFHTRTRDLERHFEPYGKIASVRIRRNFAF 133
ER LFVINFD + RTRDLERHF+ YGKI ++RIRRNFAF
Sbjct: 64 ERDSRRSGGDSRKSSSNSRPSKTLFVINFDPVNARTRDLERHFDSYGKILNIRIRRNFAF 123
Query: 134 VQYESEDDACKALEATNNSKLLDRVISVEFAA--KDDDDRRNGYSPEXXXXXXXXXXXXX 191
+Q+ES++DA +ALEATN SK +DRVI+VE+A DD DRRNGYSP+
Sbjct: 124 IQFESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDRRNGYSPDRRGHDSPDGRYGR 183
Query: 192 XXXXXXXXXERGSPDYGRGASPYKR--ERSSPDY 223
RGSPDYG G++P R R SP Y
Sbjct: 184 GRSPSPYRRGRGSPDYGHGSNPSSRPEPRGSPKY 217
>Glyma07g05900.2
Length = 233
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 104/200 (52%), Gaps = 22/200 (11%)
Query: 33 MKSGFAFIYMXXXXXXXXXXXXXXXXXFGRKGRRLRVEWTKHERGIXXXXXXXXXXXXXX 92
+ SGFAF+Y FG + RRL VEW + ERG
Sbjct: 7 LYSGFAFVYYEDERDAEEAIRALDNVPFGHEKRRLSVEWARGERG----RHHDGSKANQK 62
Query: 93 XXXXLFVINFDTFHTRTRDLERHFEPYGKIASVRIRRNFAFVQYESEDDACKALEATNNS 152
LFVINFD TR RD+E+HFEPYG + VRIRRNFAFVQ+E+++DA KALE TN S
Sbjct: 63 PTKTLFVINFDPIRTRVRDIEKHFEPYGNVLHVRIRRNFAFVQFETQEDATKALECTNMS 122
Query: 153 KLLDRVISVEFAAKDDDDRRNGY-SPEXXXXXXXXXXXXXXXXXXXXXXERGSPDYGRGA 211
K+LDRV+SVE+A +DD +R + Y SP R SPDYGR
Sbjct: 123 KILDRVVSVEYALRDDGERGDNYDSPR---------RRGGYERSPSPYHRRPSPDYGRPR 173
Query: 212 SP-YKR-------ERSSPDY 223
SP Y R R SPDY
Sbjct: 174 SPVYDRYNGGGPDMRRSPDY 193
>Glyma03g42020.1
Length = 75
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 50/60 (83%)
Query: 97 LFVINFDTFHTRTRDLERHFEPYGKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLD 156
LFVINFD TR RD+ERHFEPYGK+ ++RIRRNF+FVQ+E+++DA KALE T+ +++
Sbjct: 14 LFVINFDPIRTRVRDIERHFEPYGKVLNIRIRRNFSFVQFETQEDAIKALECTHMRSVMN 73
>Glyma10g07380.1
Length = 138
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/36 (94%), Positives = 34/36 (94%)
Query: 1 MRSIFCGNFEYDARQSELERLFRRYGKVDRVDMKSG 36
MR IFCGNFEYDARQSELERLF RYGKVDRVDMKSG
Sbjct: 1 MRPIFCGNFEYDARQSELERLFSRYGKVDRVDMKSG 36