Miyakogusa Predicted Gene
- Lj2g3v0179290.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0179290.1 tr|I3S8R8|I3S8R8_LOTJA Ribulose bisphosphate
carboxylase small chain OS=Lotus japonicus PE=2
SV=1,99.44,0,RUBISCOSMALL,Ribulose bisphosphate carboxylase, small
chain; no description,Ribulose bisphosphate ca,CUFF.37622.1
(177 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma13g07610.1 314 4e-86
Glyma19g06370.1 313 5e-86
Glyma19g06340.1 313 5e-86
Glyma19g06340.5 304 4e-83
Glyma19g06340.6 221 2e-58
Glyma18g53430.1 216 8e-57
Glyma13g00910.1 190 6e-49
Glyma19g06340.4 178 2e-45
Glyma19g06340.2 178 2e-45
Glyma19g06340.3 177 8e-45
Glyma19g06390.1 157 4e-39
Glyma18g39900.1 151 3e-37
Glyma08g48060.1 142 2e-34
Glyma14g10170.1 133 1e-31
Glyma19g06420.1 96 2e-20
>Glyma13g07610.1
Length = 178
Score = 314 bits (804), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 152/179 (84%), Positives = 161/179 (89%), Gaps = 3/179 (1%)
Query: 1 MASSMISSPAVTTVNHAN--MVAPFTGLKSMAGFPVTRKANNDITSIASNGGRVNCMQVW 58
MASSMISSPAVTTVN A MVAPFTGLKSMAGFP TRK NNDITSIASNGGRV CMQVW
Sbjct: 1 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVW 59
Query: 59 PPIGKKKFETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGFVYRENHKSPGYYDG 118
PPIGKKKFETLSYLP L QLAKEVEYL+RKGW+PCLEFE E GFVYRE+++SPGYYDG
Sbjct: 60 PPIGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDG 119
Query: 119 RYWTMWKLPMFGTTDASQVLKELEEAKKAYPNAFIRIIGFDNKRQVQCISFIAHRPEGY 177
RYWTMWKLPMFG TDASQVLKEL+EAK AYPN FIRIIGFDN RQVQCISFIA++P G+
Sbjct: 120 RYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPGF 178
>Glyma19g06370.1
Length = 178
Score = 313 bits (802), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 151/179 (84%), Positives = 161/179 (89%), Gaps = 3/179 (1%)
Query: 1 MASSMISSPAVTTVNHAN--MVAPFTGLKSMAGFPVTRKANNDITSIASNGGRVNCMQVW 58
MASSMISSPAVTTVN A MVAPFTGLKSMAGFP TRK NNDITSIASNGGRV CMQVW
Sbjct: 1 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVW 59
Query: 59 PPIGKKKFETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGFVYRENHKSPGYYDG 118
PP+GKKKFETLSYLP L QLAKEVEYL+RKGW+PCLEFE E GFVYRE+++SPGYYDG
Sbjct: 60 PPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDG 119
Query: 119 RYWTMWKLPMFGTTDASQVLKELEEAKKAYPNAFIRIIGFDNKRQVQCISFIAHRPEGY 177
RYWTMWKLPMFG TDASQVLKEL+EAK AYPN FIRIIGFDN RQVQCISFIA++P G+
Sbjct: 120 RYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPGF 178
>Glyma19g06340.1
Length = 178
Score = 313 bits (802), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 151/179 (84%), Positives = 161/179 (89%), Gaps = 3/179 (1%)
Query: 1 MASSMISSPAVTTVNHAN--MVAPFTGLKSMAGFPVTRKANNDITSIASNGGRVNCMQVW 58
MASSMISSPAVTTVN A MVAPFTGLKSMAGFP TRK NNDITSIASNGGRV CMQVW
Sbjct: 1 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVW 59
Query: 59 PPIGKKKFETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGFVYRENHKSPGYYDG 118
PP+GKKKFETLSYLP L QLAKEVEYL+RKGW+PCLEFE E GFVYRE+++SPGYYDG
Sbjct: 60 PPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDG 119
Query: 119 RYWTMWKLPMFGTTDASQVLKELEEAKKAYPNAFIRIIGFDNKRQVQCISFIAHRPEGY 177
RYWTMWKLPMFG TDASQVLKEL+EAK AYPN FIRIIGFDN RQVQCISFIA++P G+
Sbjct: 120 RYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPGF 178
>Glyma19g06340.5
Length = 170
Score = 304 bits (778), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 147/171 (85%), Positives = 154/171 (90%), Gaps = 3/171 (1%)
Query: 1 MASSMISSPAVTTVNHAN--MVAPFTGLKSMAGFPVTRKANNDITSIASNGGRVNCMQVW 58
MASSMISSPAVTTVN A MVAPFTGLKSMAGFP TRK NNDITSIASNGGRV CMQVW
Sbjct: 1 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVW 59
Query: 59 PPIGKKKFETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGFVYRENHKSPGYYDG 118
PP+GKKKFETLSYLP L QLAKEVEYL+RKGW+PCLEFE E GFVYRE+++SPGYYDG
Sbjct: 60 PPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDG 119
Query: 119 RYWTMWKLPMFGTTDASQVLKELEEAKKAYPNAFIRIIGFDNKRQVQCISF 169
RYWTMWKLPMFG TDASQVLKEL+EAK AYPN FIRIIGFDN RQVQCISF
Sbjct: 120 RYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISF 170
>Glyma19g06340.6
Length = 123
Score = 221 bits (564), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 101/123 (82%), Positives = 111/123 (90%)
Query: 55 MQVWPPIGKKKFETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGFVYRENHKSPG 114
M VWPP+GKKKFETLSYLP L QLAKEVEYL+RKGW+PCLEFE E GFVYRE+++SPG
Sbjct: 1 MHVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPG 60
Query: 115 YYDGRYWTMWKLPMFGTTDASQVLKELEEAKKAYPNAFIRIIGFDNKRQVQCISFIAHRP 174
YYDGRYWTMWKLPMFG TDASQVLKEL+EAK AYPN FIRIIGFDN RQVQCISFIA++P
Sbjct: 61 YYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKP 120
Query: 175 EGY 177
G+
Sbjct: 121 PGF 123
>Glyma18g53430.1
Length = 152
Score = 216 bits (551), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 112/167 (67%), Positives = 127/167 (76%), Gaps = 16/167 (9%)
Query: 1 MASSMISSPAVTTVNHANMVAPFTGLKSMAGFPVTRKANNDITSIASNGGRVNCMQVWPP 60
MASSM+SSPAVTTVN ++MVAPFTGLKSMAGFPVT K N DI SIASN RV CMQVWPP
Sbjct: 1 MASSMMSSPAVTTVNRSSMVAPFTGLKSMAGFPVT-KTNYDINSIASNSERVQCMQVWPP 59
Query: 61 IGKKKFETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGFVYRE-NHKSPGYYDGR 119
+GKKKFETLS+LPP + EQ V L F+ G+V+ NH+SP Y DGR
Sbjct: 60 VGKKKFETLSHLPPFSREQFMVMV-----------LNFD---GYVWGACNHRSPEYNDGR 105
Query: 120 YWTMWKLPMFGTTDASQVLKELEEAKKAYPNAFIRIIGFDNKRQVQC 166
YWTMWKLPM G TD++QVLK ++EA KAYP AF+RIIGFDN RQVQC
Sbjct: 106 YWTMWKLPMIGCTDSAQVLKGVDEAVKAYPTAFVRIIGFDNVRQVQC 152
>Glyma13g00910.1
Length = 172
Score = 190 bits (483), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 79/131 (60%), Positives = 104/131 (79%), Gaps = 1/131 (0%)
Query: 45 IASNGGRVNCMQVWPPIGKKKFETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGF 104
I SNG + CM+ W PI KKFETLSYLPPL+ E +AKE++Y+++KGW+PCLEF+ E G
Sbjct: 38 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYMLKKGWIPCLEFD-ELGC 96
Query: 105 VYRENHKSPGYYDGRYWTMWKLPMFGTTDASQVLKELEEAKKAYPNAFIRIIGFDNKRQV 164
V REN PGYYDGRYWT+WKLPMF +D+SQVLKE+ E ++ YPNA+IR + FDN+R +
Sbjct: 97 VRRENSHMPGYYDGRYWTLWKLPMFACSDSSQVLKEIHECRRVYPNAYIRCLAFDNQRHM 156
Query: 165 QCISFIAHRPE 175
Q ++FI H+P+
Sbjct: 157 QSMAFIVHKPD 167
>Glyma19g06340.4
Length = 142
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/106 (83%), Positives = 92/106 (86%), Gaps = 3/106 (2%)
Query: 1 MASSMISSPAVTTVNHAN--MVAPFTGLKSMAGFPVTRKANNDITSIASNGGRVNCMQVW 58
MASSMISSPAVTTVN A MVAPFTGLKSMAGFP TRK NNDITSIASNGGRV CMQVW
Sbjct: 1 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVW 59
Query: 59 PPIGKKKFETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGF 104
PP+GKKKFETLSYLP L QLAKEVEYL+RKGW+PCLEFE E F
Sbjct: 60 PPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEVNF 105
>Glyma19g06340.2
Length = 111
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/107 (83%), Positives = 93/107 (86%), Gaps = 3/107 (2%)
Query: 1 MASSMISSPAVTTVNHAN--MVAPFTGLKSMAGFPVTRKANNDITSIASNGGRVNCMQVW 58
MASSMISSPAVTTVN A MVAPFTGLKSMAGFP TRK NNDITSIASNGGRV CMQVW
Sbjct: 1 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVW 59
Query: 59 PPIGKKKFETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGFV 105
PP+GKKKFETLSYLP L QLAKEVEYL+RKGW+PCLEFE E F+
Sbjct: 60 PPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEVNFL 106
>Glyma19g06340.3
Length = 123
Score = 177 bits (448), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 89/109 (81%), Positives = 93/109 (85%), Gaps = 3/109 (2%)
Query: 1 MASSMISSPAVTTVNHAN--MVAPFTGLKSMAGFPVTRKANNDITSIASNGGRVNCMQVW 58
MASSMISSPAVTTVN A MVAPFTGLKSMAGFP TRK NNDITSIASNGGRV CMQVW
Sbjct: 1 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVW 59
Query: 59 PPIGKKKFETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGFVYR 107
PP+GKKKFETLSYLP L QLAKEVEYL+RKGW+PCLEFE E + R
Sbjct: 60 PPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEVTRILR 108
>Glyma19g06390.1
Length = 121
Score = 157 bits (398), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 93/165 (56%), Positives = 101/165 (61%), Gaps = 46/165 (27%)
Query: 1 MASSMISSPAVTTVNHA--NMVAPFTGLKSMAGFPVTRKANNDITSIASNGGRVNCMQVW 58
MASS ISSP VT +N +MVAPFTGLKSMAG P TRK N+DITSIA+NGGRV W
Sbjct: 1 MASSPISSPVVTIINRVGVSMVAPFTGLKSMAGIP-TRKTNSDITSIATNGGRV-----W 54
Query: 59 PPIGKKKFETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGFVYRENHKSPGYYDG 118
PP+GKKKF T SYLP L QLAKE
Sbjct: 55 PPVGKKKFGTFSYLPDLDDAQLAKE----------------------------------- 79
Query: 119 RYWTMWKLPMFGTTDASQVLKELEEAKKAYPNAFIRIIGFDNKRQ 163
T+WK PMFG TDASQVLKEL+EAK YPN+FIRIIGFDN RQ
Sbjct: 80 ---TIWKHPMFGCTDASQVLKELQEAKTTYPNSFIRIIGFDNIRQ 121
>Glyma18g39900.1
Length = 131
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/128 (66%), Positives = 92/128 (71%), Gaps = 16/128 (12%)
Query: 1 MASSMISSPAVTTVNHANMVAPFTGLKSMAGFPVTRKANNDITSIASN-----GGRVNCM 55
MASSM+SSPAVTTVN +MVAPFTGLKSMAGFPV RK N DIT + +
Sbjct: 1 MASSMMSSPAVTTVNRGSMVAPFTGLKSMAGFPV-RKTNYDITYHKQHWKITMHQHTMQI 59
Query: 56 QVWPPIGKKKFETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETE---KGFVYRENHKS 112
+VWP IG KKFETLSYLPPLT EQL KE GW+PCLEFE E KGFVYRENH+S
Sbjct: 60 KVWPQIG-KKFETLSYLPPLTREQLLKE------DGWIPCLEFELESVPKGFVYRENHRS 112
Query: 113 PGYYDGRY 120
PGYYDG Y
Sbjct: 113 PGYYDGSY 120
>Glyma08g48060.1
Length = 89
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/101 (76%), Positives = 80/101 (79%), Gaps = 12/101 (11%)
Query: 1 MASSMISSPAVTTVNHANMVAPFTGLKSMAGFPVTRKANNDITSIASNGGRVNCMQVWPP 60
MASSM+SSPAVTTVN +MVAPFTGLKSMAGFPV RK N DITSIASN GR VWPP
Sbjct: 1 MASSMMSSPAVTTVNRGSMVAPFTGLKSMAGFPV-RKTNYDITSIASNTGR-----VWPP 54
Query: 61 IGKKKFETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETE 101
IGKKKFETLSYLPPLT EQL KE GW+PCLEFE E
Sbjct: 55 IGKKKFETLSYLPPLTREQLLKE------DGWIPCLEFELE 89
>Glyma14g10170.1
Length = 135
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/101 (72%), Positives = 77/101 (76%), Gaps = 12/101 (11%)
Query: 1 MASSMISSPAVTTVNHANMVAPFTGLKSMAGFPVTRKANNDITSIASNGGRVNCMQVWPP 60
MASSM+SSPAVTTVN +MVAPF+GLKSMAGFPV RK DITSIASN GR VWP
Sbjct: 1 MASSMMSSPAVTTVNRGSMVAPFSGLKSMAGFPV-RKTKYDITSIASNTGR-----VWPR 54
Query: 61 IGKKKFETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETE 101
IGKKKFET SYLPPLT EQL KE GW+PCLEFE E
Sbjct: 55 IGKKKFETPSYLPPLTREQLLKE------DGWIPCLEFELE 89
>Glyma19g06420.1
Length = 123
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 69/132 (52%), Gaps = 33/132 (25%)
Query: 57 VWPPIGKKKFETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGFVYRENHKSPGYY 116
VW PIGKK FETLSYLP L QLAKEVEYL+R GW+PCLEFE E V ++
Sbjct: 1 VWQPIGKK-FETLSYLPNLDDAQLAKEVEYLLRNGWIPCLEFELEFSLVL--------FF 51
Query: 117 DGRYW---------TMWKLPM-------FGTTDASQVLKE--------LEEAKKAYPNAF 152
Y+ M L + TTD + + L AK YPNAF
Sbjct: 52 VSTYFEEIIVFHAILMVDLSVCSTVSCTVSTTDHQDTMMDATRPCGSCLCLAKTTYPNAF 111
Query: 153 IRIIGFDNKRQV 164
IRIIGFDN RQV
Sbjct: 112 IRIIGFDNVRQV 123