Miyakogusa Predicted Gene
- Lj2g3v0093580.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0093580.1 tr|G7L911|G7L911_MEDTR B3 domain-containing
protein OS=Medicago truncatula GN=MTR_8g103940 PE=4
SV=1,53.95,0.00000000002,B3,B3 DNA binding domain; DNA-binding
pseudobarrel domain,DNA-binding pseudobarrel domain; no
descri,CUFF.34199.1
(95 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma09g20060.1 59 1e-09
Glyma09g18790.1 57 6e-09
Glyma16g05110.1 53 6e-08
Glyma10g42770.1 52 1e-07
Glyma11g13210.1 52 1e-07
Glyma11g13210.2 52 1e-07
Glyma12g05250.1 51 3e-07
Glyma12g05250.2 51 3e-07
Glyma07g21160.1 50 7e-07
Glyma20g01130.1 50 8e-07
Glyma17g36490.1 49 8e-07
Glyma18g30700.1 48 2e-06
Glyma20g24270.1 47 5e-06
>Glyma09g20060.1
Length = 289
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 35/47 (74%), Gaps = 2/47 (4%)
Query: 1 MILYVIDGRTWHVKYLLRRGTISAGWKKFASDNNLKVGDVCVFELTK 47
+IL ++DGRTW V + ++ GW+KFAS+NNL VGDVCVFEL +
Sbjct: 208 VILEILDGRTWSV--ICSATRLTEGWQKFASENNLNVGDVCVFELIQ 252
>Glyma09g18790.1
Length = 317
Score = 56.6 bits (135), Expect = 6e-09, Method: Composition-based stats.
Identities = 27/47 (57%), Positives = 35/47 (74%), Gaps = 2/47 (4%)
Query: 1 MILYVIDGRTWHVKYLLRRGTISAGWKKFASDNNLKVGDVCVFELTK 47
+IL V++GRTW V + TI+ GW KFAS+N+L VGDVCVFEL +
Sbjct: 226 VILEVLEGRTWPV--ICSAPTITGGWHKFASENHLNVGDVCVFELIQ 270
>Glyma16g05110.1
Length = 313
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 6/49 (12%)
Query: 3 LYVIDGRTWHVKYLLRRGT------ISAGWKKFASDNNLKVGDVCVFEL 45
L V++GR W KY++++ +++GWK F DNNLKVG+VC FEL
Sbjct: 247 LQVLNGRIWPAKYMIQKMKNKTNFRLTSGWKTFVKDNNLKVGNVCTFEL 295
>Glyma10g42770.1
Length = 277
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Query: 1 MILYVIDGRTWHVKYLLRRGT----ISAGWKKFASDNNLKVGDVCVFELTK 47
+ L++ + RTW+VK+ R + + AGW +F DNNLK+GD+CVFE K
Sbjct: 203 VFLWISEERTWNVKFYPNRCSGQIILGAGWMEFLKDNNLKIGDLCVFEQIK 253
>Glyma11g13210.1
Length = 431
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 6/97 (6%)
Query: 3 LYVIDGRTWHVKYLLR--RGTISAGWKKFASDNNLKVGDVCVFELTKNNLFLSKYQSFHL 60
L + +GR W V+ L + R +S GW +F+ +NNL GDVCVFEL + + + FH+
Sbjct: 333 LQISNGRQWPVRCLYKGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVTIFHV 392
Query: 61 GENHINLI--PLHHKVGRQLRKELMNSPQKTPISQSK 95
E+ + L+ PL H K L+++P + ++ +K
Sbjct: 393 TED-VGLLSPPLQHNQNMTSAK-LLSTPLQQHLTSTK 427
>Glyma11g13210.2
Length = 404
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 6/97 (6%)
Query: 3 LYVIDGRTWHVKYLLR--RGTISAGWKKFASDNNLKVGDVCVFELTKNNLFLSKYQSFHL 60
L + +GR W V+ L + R +S GW +F+ +NNL GDVCVFEL + + + FH+
Sbjct: 306 LQISNGRQWPVRCLYKGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVTIFHV 365
Query: 61 GENHINLI--PLHHKVGRQLRKELMNSPQKTPISQSK 95
E+ + L+ PL H K L+++P + ++ +K
Sbjct: 366 TED-VGLLSPPLQHNQNMTSAK-LLSTPLQQHLTSTK 400
>Glyma12g05250.1
Length = 441
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 3 LYVIDGRTWHVKYLLR--RGTISAGWKKFASDNNLKVGDVCVFELTKNNLFLSKYQSFHL 60
L + +GR W V+ L R R +S GW +F+ +NNL GDVCVFEL + + + F +
Sbjct: 337 LQISNGRQWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVTVFRV 396
Query: 61 GENHINLIPLHHKVGRQLRKELMNSPQKTPISQSK 95
E+ L P + +++N+P + ++ +K
Sbjct: 397 IEDVGLLSPPLQQNQNMSSAKMLNTPLQQHLTSTK 431
>Glyma12g05250.2
Length = 436
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 3 LYVIDGRTWHVKYLLR--RGTISAGWKKFASDNNLKVGDVCVFELTKNNLFLSKYQSFHL 60
L + +GR W V+ L R R +S GW +F+ +NNL GDVCVFEL + + + F +
Sbjct: 332 LQISNGRQWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVTVFRV 391
Query: 61 GENHINLIPLHHKVGRQLRKELMNSPQKTPISQSK 95
E+ L P + +++N+P + ++ +K
Sbjct: 392 IEDVGLLSPPLQQNQNMSSAKMLNTPLQQHLTSTK 426
>Glyma07g21160.1
Length = 437
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 3 LYVIDGRTWHVKYLLR--RGTISAGWKKFASDNNLKVGDVCVFELTKNNLFLSKYQSFHL 60
L + +GR W V+ L R R +S GW +F +NNL GDVCVFEL + + + F +
Sbjct: 335 LQLSNGRQWSVRCLYRGGRAKLSQGWFEFTVENNLGEGDVCVFELLRMKEVVLQVTVFRV 394
Query: 61 GENH--INLIPL 70
E+ +N +P+
Sbjct: 395 TEDAGLLNQLPM 406
>Glyma20g01130.1
Length = 435
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 3 LYVIDGRTWHVKYLLR--RGTISAGWKKFASDNNLKVGDVCVFELTKNNLFLSKYQSFHL 60
L + +GR W V+ L R R +S GW +F +NNL GDVCVFEL + + + F +
Sbjct: 333 LQLSNGRQWSVRCLYRGGRAKLSQGWFEFTVENNLGEGDVCVFELLRTKEVVLQVTVFRV 392
Query: 61 GEN 63
E+
Sbjct: 393 TED 395
>Glyma17g36490.1
Length = 407
Score = 49.3 bits (116), Expect = 8e-07, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 11 WHVKY----LLRRGTISAGWKKFASDNNLKVGDVCVFELT--KNNLFLSKYQSFHLGENH 64
W +Y + G ++ GWK F+ DNNL+ GD CVF+ NN F+ F +
Sbjct: 318 WIARYSYNNIRNNGGLTGGWKHFSLDNNLEEGDACVFKPAGQMNNTFVIDMSIFRVVPET 377
Query: 65 INLIPLHHKVGRQLRKELMNSPQKTPIS 92
+ L P+ GR+ RK+ +T +S
Sbjct: 378 VPLTPMSRGTGRRGRKQATMKSIQTQLS 405
>Glyma18g30700.1
Length = 113
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 3 LYVIDGRTWHVKYLLRRGTISA----GWKKFASDNNLKVGDVCVFEL 45
L V+ GR W KY + + + W F DNNLKVGDVC+FEL
Sbjct: 19 LQVLSGRIWPAKYQIHKQKTAIRFKLSWNAFVKDNNLKVGDVCIFEL 65
>Glyma20g24270.1
Length = 254
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 28/37 (75%), Gaps = 2/37 (5%)
Query: 9 RTWHVKYLLRRGTISAGWKKFASDNNLKVGDVCVFEL 45
R+W+VK L R +SAGW FAS++ L+ GDVCVFEL
Sbjct: 203 RSWNVKLLNNR--LSAGWTSFASESELQPGDVCVFEL 237