Miyakogusa Predicted Gene

Lj2g3v0044990.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0044990.3 Non Chatacterized Hit- tr|I1HM45|I1HM45_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,67.69,3e-19,SNF5,SNF5/SMARCB1/INI1,CUFF.34158.3
         (81 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g17760.1                                                       142   6e-35
Glyma17g04750.1                                                       136   4e-33

>Glyma13g17760.1 
          Length = 240

 Score =  142 bits (359), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 68/77 (88%), Positives = 71/77 (92%)

Query: 1  MKTPASVFYRNPVKFRMPTAENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTV 60
          MKTP S FYRNPVKFRMPTAENLVPIRLDIEI+ +RYKDAFTWNPSDPD EV VFA+RTV
Sbjct: 1  MKTPISGFYRNPVKFRMPTAENLVPIRLDIEIEGQRYKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 61 KDLKLPPPFVTQIAQSI 77
          KDLKLPP FVTQIAQSI
Sbjct: 61 KDLKLPPAFVTQIAQSI 77


>Glyma17g04750.1 
          Length = 198

 Score =  136 bits (343), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 66/81 (81%), Positives = 70/81 (86%)

Query: 1  MKTPASVFYRNPVKFRMPTAENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTV 60
          MKT  S FYRNPVKFRMPTAENLVPIRLDIEI+ +RYKDA TWNPSDPD EV VFA+RT 
Sbjct: 1  MKTTISCFYRNPVKFRMPTAENLVPIRLDIEIEGQRYKDALTWNPSDPDSEVVVFAKRTA 60

Query: 61 KDLKLPPPFVTQIAQSIVTAS 81
          KDLKLPP FVTQIAQSI  +S
Sbjct: 61 KDLKLPPVFVTQIAQSIQFSS 81