Miyakogusa Predicted Gene

Lj2g3v0044990.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0044990.2 tr|E5GC48|E5GC48_CUCME SNF5-like protein BSH
OS=Cucumis melo subsp. melo PE=4
SV=1,74.55,1e-18,SNF5,SNF5/SMARCB1/INI1; Peptidase_C48,Peptidase C48,
SUMO/Sentrin/Ubl1,CUFF.34158.2
         (105 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g17760.1                                                       111   1e-25
Glyma17g04750.1                                                        84   2e-17
Glyma09g28810.1                                                        80   3e-16

>Glyma13g17760.1 
          Length = 240

 Score =  111 bits (278), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 50/55 (90%), Positives = 51/55 (92%)

Query: 1   MYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFESDPEELARIFCKDMGIEDPEVG 55
           MYAGEKI+PIKLDL VNH LVKDQFLWDLNNFESDPEE ARIFCKD GIEDPEVG
Sbjct: 92  MYAGEKIVPIKLDLRVNHTLVKDQFLWDLNNFESDPEEFARIFCKDTGIEDPEVG 146


>Glyma17g04750.1 
          Length = 198

 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 37/44 (84%), Positives = 39/44 (88%)

Query: 12  LDLCVNHMLVKDQFLWDLNNFESDPEELARIFCKDMGIEDPEVG 55
           LDL VNH LVKDQFLWD NNFESDP+E AR+FCKD GIEDPEVG
Sbjct: 123 LDLRVNHTLVKDQFLWDSNNFESDPKEFARLFCKDTGIEDPEVG 166


>Glyma09g28810.1 
          Length = 66

 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 36/54 (66%), Positives = 42/54 (77%)

Query: 1  MYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFESDPEELARIFCKDMGIEDPEV 54
          MY GEKI+PIKLDLCVNH LVKDQFLWDL+NFESD EE A+I  +   +  P +
Sbjct: 1  MYVGEKIVPIKLDLCVNHTLVKDQFLWDLDNFESDHEEFAKISTRTRALNIPRL 54