Miyakogusa Predicted Gene

Lj2g3v0039360.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0039360.1 Non Chatacterized Hit- tr|I3SGA6|I3SGA6_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.86,0,SHS2_Rpb7-N,RNA polymerase Rpb7, N-terminal; S1,Ribosomal
protein S1, RNA-binding domain; no descrip,CUFF.34130.1
         (176 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g09000.1                                                       354   2e-98
Glyma05g26040.7                                                       354   2e-98
Glyma05g26040.6                                                       354   2e-98
Glyma05g26040.5                                                       354   2e-98
Glyma05g26040.1                                                       324   3e-89
Glyma05g26040.4                                                       276   6e-75
Glyma14g01120.1                                                       259   9e-70
Glyma05g26040.3                                                       228   3e-60
Glyma05g26040.2                                                       193   8e-50
Glyma20g34690.1                                                        88   6e-18
Glyma20g34690.3                                                        88   6e-18
Glyma20g34690.2                                                        88   6e-18

>Glyma08g09000.1 
          Length = 176

 Score =  354 bits (909), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 171/176 (97%), Positives = 174/176 (98%)

Query: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
           MFFHIVLERNMQLHPRYFGRNLRDNLV+KLMKDVEGTCSGRHGFVVAVTGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPVAI 176
           SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP  +
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV 176


>Glyma05g26040.7 
          Length = 176

 Score =  354 bits (909), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 171/176 (97%), Positives = 174/176 (98%)

Query: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
           MFFHIVLERNMQLHPRYFGRNLRDNLV+KLMKDVEGTCSGRHGFVVAVTGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPVAI 176
           SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP  +
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV 176


>Glyma05g26040.6 
          Length = 176

 Score =  354 bits (909), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 171/176 (97%), Positives = 174/176 (98%)

Query: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
           MFFHIVLERNMQLHPRYFGRNLRDNLV+KLMKDVEGTCSGRHGFVVAVTGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPVAI 176
           SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP  +
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV 176


>Glyma05g26040.5 
          Length = 176

 Score =  354 bits (909), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 171/176 (97%), Positives = 174/176 (98%)

Query: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
           MFFHIVLERNMQLHPRYFGRNLRDNLV+KLMKDVEGTCSGRHGFVVAVTGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPVAI 176
           SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP  +
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV 176


>Glyma05g26040.1 
          Length = 217

 Score =  324 bits (830), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 155/159 (97%), Positives = 158/159 (99%)

Query: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
           MFFHIVLERNMQLHPRYFGRNLRDNLV+KLMKDVEGTCSGRHGFVVAVTGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCI 159
           SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEI C+
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIVCL 159


>Glyma05g26040.4 
          Length = 140

 Score =  276 bits (707), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 133/136 (97%), Positives = 135/136 (99%)

Query: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
           MFFHIVLERNMQLHPRYFGRNLRDNLV+KLMKDVEGTCSGRHGFVVAVTGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDMPNYTTSDGSVKI 136
           SGDMPNYTTSDGSV I
Sbjct: 121 SGDMPNYTTSDGSVCI 136


>Glyma14g01120.1 
          Length = 171

 Score =  259 bits (663), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 131/176 (74%), Positives = 147/176 (83%), Gaps = 5/176 (2%)

Query: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
           MFFHIVLER MQLHPRYFG N+RDNLV+KLMKDV+GTCSGRH FVVAVTGIEN+GKGLI 
Sbjct: 1   MFFHIVLERKMQLHPRYFGCNIRDNLVSKLMKDVKGTCSGRHKFVVAVTGIENIGKGLIH 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPF G ++    +++ ++     +   +++    LIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFPG-LIRLYSSLLFRVIKLCNSNLWRLWFMT-LIPDDMEFQ 118

Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPVAI 176
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVD TEIFC   IKDDFLGVINDP  I
Sbjct: 119 SGDLPNYTTSDGSVKIQKDSEVRLKIIGTRVDPTEIFC---IKDDFLGVINDPATI 171


>Glyma05g26040.3 
          Length = 117

 Score =  228 bits (581), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 109/112 (97%), Positives = 112/112 (100%)

Query: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
           MFFHIVLERNMQLHPRYFGRNLRDNLV+KLMKDVEGTCSGRHGFVVAVTGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHL 112
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNH+
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHV 112


>Glyma05g26040.2 
          Length = 105

 Score =  193 bits (490), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 92/95 (96%), Positives = 95/95 (100%)

Query: 1  MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
          MFFHIVLERNMQLHPRYFGRNLRDNLV+KLMKDVEGTCSGRHGFVVAVTGIEN+GKGLIR
Sbjct: 1  MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60

Query: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKM 95
          DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNK+
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKV 95


>Glyma20g34690.1 
          Length = 198

 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 96/177 (54%), Gaps = 18/177 (10%)

Query: 5   IVLERNMQ-----LHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLI 59
           I+   N+Q     LH     R L D  V K  KD+        G+ +AVT +E +G+G +
Sbjct: 30  IIAAENLQPEGLMLHRAIIVRLLSDFAVKKATKDL--------GYFLAVTTLEKIGEGKV 81

Query: 60  RDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPDDME 118
           R  TG V FPV +  + F+ FKGEILE VV  V K G F   GP++ +++SN  +P D  
Sbjct: 82  RQHTGDVLFPVVFNVITFKFFKGEILEGVVHKVLKHGVFMRCGPIENVYLSNLKMP-DYR 140

Query: 119 FQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVINDP 173
           +  G+   +  +D   KI KD  VR  +IGT+ ++A   F  + +++ D+LG I+ P
Sbjct: 141 YVPGENACF-MNDKMSKIGKDVTVRFSVIGTKWMEAEREFQALVSLEGDYLGPISTP 196


>Glyma20g34690.3 
          Length = 180

 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 96/177 (54%), Gaps = 18/177 (10%)

Query: 5   IVLERNMQ-----LHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLI 59
           I+   N+Q     LH     R L D  V K  KD+        G+ +AVT +E +G+G +
Sbjct: 12  IIAAENLQPEGLMLHRAIIVRLLSDFAVKKATKDL--------GYFLAVTTLEKIGEGKV 63

Query: 60  RDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPDDME 118
           R  TG V FPV +  + F+ FKGEILE VV  V K G F   GP++ +++SN  +P D  
Sbjct: 64  RQHTGDVLFPVVFNVITFKFFKGEILEGVVHKVLKHGVFMRCGPIENVYLSNLKMP-DYR 122

Query: 119 FQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVINDP 173
           +  G+   +  +D   KI KD  VR  +IGT+ ++A   F  + +++ D+LG I+ P
Sbjct: 123 YVPGENACF-MNDKMSKIGKDVTVRFSVIGTKWMEAEREFQALVSLEGDYLGPISTP 178


>Glyma20g34690.2 
          Length = 180

 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 96/177 (54%), Gaps = 18/177 (10%)

Query: 5   IVLERNMQ-----LHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLI 59
           I+   N+Q     LH     R L D  V K  KD+        G+ +AVT +E +G+G +
Sbjct: 12  IIAAENLQPEGLMLHRAIIVRLLSDFAVKKATKDL--------GYFLAVTTLEKIGEGKV 63

Query: 60  RDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPDDME 118
           R  TG V FPV +  + F+ FKGEILE VV  V K G F   GP++ +++SN  +P D  
Sbjct: 64  RQHTGDVLFPVVFNVITFKFFKGEILEGVVHKVLKHGVFMRCGPIENVYLSNLKMP-DYR 122

Query: 119 FQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVINDP 173
           +  G+   +  +D   KI KD  VR  +IGT+ ++A   F  + +++ D+LG I+ P
Sbjct: 123 YVPGENACF-MNDKMSKIGKDVTVRFSVIGTKWMEAEREFQALVSLEGDYLGPISTP 178