Miyakogusa Predicted Gene

Lj1g3v5060560.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v5060560.1 Non Chatacterized Hit- tr|E0CVC0|E0CVC0_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,64.86,4e-19,60S
ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER,NULL; Ribosomal_60s,Ribosomal
protein 60S; seg,NULL,CUFF.34230.1
         (110 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g42180.3                                                        91   3e-19
Glyma03g42180.1                                                        91   3e-19
Glyma03g42180.2                                                        90   4e-19
Glyma19g44920.2                                                        89   9e-19
Glyma19g44920.3                                                        89   1e-18
Glyma19g44920.1                                                        89   1e-18
Glyma04g40720.1                                                        70   4e-13
Glyma06g14080.1                                                        66   8e-12

>Glyma03g42180.3 
          Length = 112

 Score = 90.9 bits (224), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 49/59 (83%)

Query: 1  MSLGETACSYALLILEDDKIAATADNISTLLKTANVKVESYWAPLFAKLAEKKNLQDLI 59
          MSLGETACSYA LIL +D I+ TAD ISTLLKTA V V+SYW  LFAKLAEKKNL DLI
Sbjct: 1  MSLGETACSYAALILHEDGISVTADKISTLLKTAKVPVDSYWPTLFAKLAEKKNLGDLI 59


>Glyma03g42180.1 
          Length = 164

 Score = 90.9 bits (224), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 49/59 (83%)

Query: 1  MSLGETACSYALLILEDDKIAATADNISTLLKTANVKVESYWAPLFAKLAEKKNLQDLI 59
          MSLGETACSYA LIL +D I+ TAD ISTLLKTA V V+SYW  LFAKLAEKKNL DLI
Sbjct: 1  MSLGETACSYAALILHEDGISVTADKISTLLKTAKVPVDSYWPTLFAKLAEKKNLGDLI 59


>Glyma03g42180.2 
          Length = 99

 Score = 90.1 bits (222), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 49/59 (83%)

Query: 1  MSLGETACSYALLILEDDKIAATADNISTLLKTANVKVESYWAPLFAKLAEKKNLQDLI 59
          MSLGETACSYA LIL +D I+ TAD ISTLLKTA V V+SYW  LFAKLAEKKNL DLI
Sbjct: 1  MSLGETACSYAALILHEDGISVTADKISTLLKTAKVPVDSYWPTLFAKLAEKKNLGDLI 59


>Glyma19g44920.2 
          Length = 99

 Score = 89.0 bits (219), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 50/59 (84%)

Query: 1  MSLGETACSYALLILEDDKIAATADNISTLLKTANVKVESYWAPLFAKLAEKKNLQDLI 59
          MSLGETACSYA LIL +D I+ TAD ISTLL+TA V+V++YW  LFAKLAEKKNL DLI
Sbjct: 1  MSLGETACSYAALILHEDGISVTADKISTLLETAKVQVDTYWPTLFAKLAEKKNLGDLI 59


>Glyma19g44920.3 
          Length = 113

 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 50/59 (84%)

Query: 1  MSLGETACSYALLILEDDKIAATADNISTLLKTANVKVESYWAPLFAKLAEKKNLQDLI 59
          MSLGETACSYA LIL +D I+ TAD ISTLL+TA V+V++YW  LFAKLAEKKNL DLI
Sbjct: 1  MSLGETACSYAALILHEDGISVTADKISTLLETAKVQVDTYWPTLFAKLAEKKNLGDLI 59


>Glyma19g44920.1 
          Length = 113

 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 50/59 (84%)

Query: 1  MSLGETACSYALLILEDDKIAATADNISTLLKTANVKVESYWAPLFAKLAEKKNLQDLI 59
          MSLGETACSYA LIL +D I+ TAD ISTLL+TA V+V++YW  LFAKLAEKKNL DLI
Sbjct: 1  MSLGETACSYAALILHEDGISVTADKISTLLETAKVQVDTYWPTLFAKLAEKKNLGDLI 59


>Glyma04g40720.1 
          Length = 110

 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 50/110 (45%)

Query: 1   MSLGETACSYALLILEDDKIAATADNISTLLKTANVKVESYWAPLFAKLAEKKNLQDLIX 60
           M  G   C  A LIL D++I  TA+ I+ LLK +NV  ESYW  LFAKLA+ KN++DLI 
Sbjct: 1   MDSGVQGCILATLILHDEEIPVTAEKINALLKASNVSAESYWPSLFAKLAQNKNIEDLIL 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 110
                                                  SDDDMGF LFD
Sbjct: 61  NAGGGGAAVAVAAPAGGGGGAAAAAAPAAEEKKEEVKEESDDDMGFGLFD 110


>Glyma06g14080.1 
          Length = 111

 Score = 66.2 bits (160), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 40/59 (67%)

Query: 1  MSLGETACSYALLILEDDKIAATADNISTLLKTANVKVESYWAPLFAKLAEKKNLQDLI 59
          M  G   C  A LIL D++I  TA+ I+ LLK +NV  ESYW  LFAKLA+ KN++DLI
Sbjct: 1  MDSGVQGCILATLILHDEEIPVTAEKINALLKASNVSAESYWPSLFAKLAQNKNIEDLI 59