Miyakogusa Predicted Gene

Lj1g3v5038210.2
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v5038210.2 tr|H3G9I1|H3G9I1_PHYRM DNA-directed RNA
polymerase subunit OS=Phytophthora ramorum
GN=fgenesh1_pm.C_,46.85,8e-19,RNA polymerase subunit,DNA-directed RNA
polymerase, M/15kDa subunit; C2C2 Zinc finger,Zinc finger,
T,CUFF.33918.2
         (111 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g39550.1                                                       165   8e-42
Glyma07g15730.1                                                       160   2e-40

>Glyma18g39550.1 
          Length = 111

 Score =  165 bits (418), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 86/111 (77%)

Query: 1   MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 60
           MEFCPSC NML++ELP MG  SR FC  CPYVC+IE  V+IKRKQRLVRKEI+P+ S DD
Sbjct: 1   MEFCPSCGNMLQYELPYMGRPSRFFCSACPYVCHIENRVEIKRKQRLVRKEIEPIFSEDD 60

Query: 61  MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 111
           M NAP+TE  CP C H KAA+ E Q RSADEPAT+FY CLN  C+ QWRE 
Sbjct: 61  MTNAPSTEGTCPFCGHGKAAFKEFQTRSADEPATLFYKCLNNDCKKQWREG 111


>Glyma07g15730.1 
          Length = 111

 Score =  160 bits (406), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 73/111 (65%), Positives = 84/111 (75%)

Query: 1   MEFCPSCSNMLKFELPNMGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVISYDD 60
           MEFCP+C NML++ELP MG  SR FC  CPYVC IE  V+IKRKQRLV KEI+P+ S DD
Sbjct: 1   MEFCPTCGNMLQYELPYMGRPSRFFCSACPYVCLIENRVEIKRKQRLVSKEIEPIFSEDD 60

Query: 61  MKNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 111
           M NA +TE  CP C H KAA+ E Q RSADEPAT+FY CLN +C+ QWRE 
Sbjct: 61  MTNAASTEATCPFCGHGKAAFKEFQTRSADEPATLFYKCLNNECKKQWREG 111