Miyakogusa Predicted Gene

Lj1g3v5036100.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v5036100.1 tr|B4FKL9|B4FKL9_MAIZE Fiber protein Fb11 OS=Zea
mays PE=4 SV=1,76.19,2e-19, ,CUFF.33915.1
         (63 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g44620.1                                                       115   1e-26
Glyma03g41940.1                                                       115   1e-26

>Glyma19g44620.1 
          Length = 63

 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/63 (90%), Positives = 59/63 (93%)

Query: 1  MAVMENLKMFVVQQPVVAASCLIAGFGLFLPAFVRPMLDSYQGTKPAPQPALNDVVAGMT 60
          MAVME LKMFVVQ+PVVAASCLIAGFGLFLPAFVRPMLDSYQ TK  PQPAL+DVVAGMT
Sbjct: 1  MAVMERLKMFVVQEPVVAASCLIAGFGLFLPAFVRPMLDSYQATKQPPQPALSDVVAGMT 60

Query: 61 GKK 63
          GKK
Sbjct: 61 GKK 63


>Glyma03g41940.1 
          Length = 63

 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/63 (90%), Positives = 59/63 (93%)

Query: 1  MAVMENLKMFVVQQPVVAASCLIAGFGLFLPAFVRPMLDSYQGTKPAPQPALNDVVAGMT 60
          MAVME LKMFVVQ+PVVAASCLIAGFGLFLPAFVRPMLDSYQ TK  PQPAL+DVVAGMT
Sbjct: 1  MAVMERLKMFVVQEPVVAASCLIAGFGLFLPAFVRPMLDSYQATKQPPQPALSDVVAGMT 60

Query: 61 GKK 63
          GKK
Sbjct: 61 GKK 63