Miyakogusa Predicted Gene

Lj1g3v5021090.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v5021090.1 tr|B9GQH8|B9GQH8_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_756257
PE=4,47.47,1e-18,DUF4228,Protein of unknown function DUF4228;
seg,NULL,CUFF.33853.1
         (196 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g41440.1                                                        92   3e-19

>Glyma03g41440.1 
          Length = 218

 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/71 (60%), Positives = 51/71 (71%), Gaps = 8/71 (11%)

Query: 1  MALLS--------TRTESHVLKLVHPGGIVELYFNPVLASEIMKKNPRHWVTRPDFFKFP 52
          M LLS        TR ES  LKLVHPGG VEL+ NP++AS++M KNPRH VTRPDFF+FP
Sbjct: 1  MGLLSKSKSTMPGTRRESQFLKLVHPGGFVELHSNPIIASQVMNKNPRHCVTRPDFFQFP 60

Query: 53 WIVVSPQAILT 63
          WIV+    I+T
Sbjct: 61 WIVIKSTNIVT 71