Miyakogusa Predicted Gene

Lj1g3v5021050.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v5021050.1 tr|B9IPL1|B9IPL1_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_248529
PE=4,67.8,2e-16, ,CUFF.33848.1
         (86 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g44020.1                                                        99   9e-22

>Glyma19g44020.1 
          Length = 350

 Score = 99.0 bits (245), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 45/53 (84%), Positives = 50/53 (94%)

Query: 1   MGKRPVSDFEDPRLGGQVDKEDFNAILQIAVLCVAKSSKGRPTIEIIFDELDK 53
           MGKRP+SDFEDPRL G+VDK DF AILQIAVLCVAKSSKGRPTIE++F+ELDK
Sbjct: 277 MGKRPLSDFEDPRLNGKVDKADFEAILQIAVLCVAKSSKGRPTIELVFEELDK 329