Miyakogusa Predicted Gene
- Lj1g3v4955430.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4955430.1 tr|B9I614|B9I614_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_241858
PE=4,38.46,0.00000000000001,DS_RBD,Double-stranded RNA-binding;
seg,NULL; Double-stranded RNA binding motif,Double-stranded
RNA-,CUFF.33717.1
(528 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma19g42970.1 647 0.0
Glyma03g40340.1 303 2e-82
Glyma12g29420.1 241 2e-63
Glyma12g08070.1 239 6e-63
Glyma11g20530.1 239 7e-63
Glyma13g40070.1 236 5e-62
Glyma06g34600.1 201 2e-51
Glyma05g10870.1 122 1e-27
Glyma04g10230.1 94 5e-19
Glyma06g10200.2 92 1e-18
Glyma06g10200.1 87 4e-17
Glyma14g07600.1 85 2e-16
Glyma08g42580.1 67 4e-11
Glyma18g50130.1 55 2e-07
>Glyma19g42970.1
Length = 527
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/542 (65%), Positives = 383/542 (70%), Gaps = 29/542 (5%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGE FESPTFCSTLRQAEHAA
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGETFESPTFCSTLRQAEHAA 60
Query: 61 AEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYS 120
AEVALNT A+RGPS ALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGH PN+S
Sbjct: 61 AEVALNTIAKRGPSGALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHGPNFS 120
Query: 121 CTVEIAGMHFTGDPARTXXXXXXXXXXXXXXXLRKL-------PRLHLSSSESKGNEEQE 173
C+VEIAGMHFTGDP+RT LRKL S ESK NEEQE
Sbjct: 121 CSVEIAGMHFTGDPSRTKKQAQKNAAMAAWSALRKLSEHHLSSSTSSSFSRESKANEEQE 180
Query: 174 QVIIARVLASLHPCRSKNFSESDHQHRYQNSSSTKVQPTLGMYPPQWQHCGISSFSPDLT 233
QVIIA VLASLHP SKNFS SD Q +Q S++T + T FSP++
Sbjct: 181 QVIIAGVLASLHPSGSKNFSTSDSQLGWQKSTTTSLVST---------QSTADFFSPEVA 231
Query: 234 LYXXXXXXXXXXXXNSLLALTXXXXXXXXXXXYPLVQSVLQPDHCHYFPPRELASVPVGP 293
LY N LL LT YPL+QSV QPDHC YFP RELASVP+GP
Sbjct: 232 LYQTWQQQQIMQQQNRLLELTIQPIIPSTPEIYPLMQSVFQPDHCLYFPARELASVPLGP 291
Query: 294 RFSIAASRPSFYFSNQIVPELNRGRSTVTIREIQEEKVEDPSVCNFSNETRVPT---EDE 350
+ SIA S PSFY SNQIVPELN GRST+TIREIQEEK EDP VC FSNETRV T EDE
Sbjct: 292 KLSIATSNPSFYSSNQIVPELNTGRSTLTIREIQEEKTEDPPVCTFSNETRVLTPAPEDE 351
Query: 351 RQKH-GSGSRRRNAELVGEQSGKSEWDSHRNIGSIHKPANIELQNSSNIDTSVPRGHLQA 409
QKH GSG R RNAELVGE K+E DSH + S+ +P N ELQN S+ID+SV R H QA
Sbjct: 352 IQKHGGSGGRSRNAELVGEHCEKTECDSHWSTRSVIRPVNTELQNPSSIDSSVLRAHSQA 411
Query: 410 SFNRSFR-SRAVSSSMVRTMAPTSPPGSRPRHPEVPLAVASRLRTGVPRSPGMPTSERLG 468
S NRSFR A SSS+VRTM PTS GSRP+H ASRLRTG PRSPG+PTSER G
Sbjct: 412 SSNRSFRPPAAASSSIVRTMCPTSSVGSRPQH------AASRLRTGTPRSPGIPTSERFG 465
Query: 469 M--SPTSLFTAPPVRIRSVVPVCSAPPGRSIAEVXXXXXXXXXXXXXXXXXRTSSELGHL 526
M +PT LF AP VRIRSVVPVCSAPP RS+AEV RTSSELGHL
Sbjct: 466 MIRAPTPLFMAPAVRIRSVVPVCSAPPRRSMAEVSQSKEKEDLKPEDKEVSRTSSELGHL 525
Query: 527 RL 528
R+
Sbjct: 526 RI 527
>Glyma03g40340.1
Length = 286
Score = 303 bits (777), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 184/288 (63%), Positives = 202/288 (70%), Gaps = 13/288 (4%)
Query: 248 NSLLALTXXXXXXXXXXXYPLVQSVLQPDHCHYFPPRELASVPVGPRFSIAASRPSFYFS 307
N LLALT YPL+QSV QPDHC YFP RELASVPVGP+ SI +S PSFY S
Sbjct: 5 NRLLALTIQPIIPSTSQIYPLMQSVFQPDHCLYFPARELASVPVGPKLSIPSSSPSFYSS 64
Query: 308 NQIVPELNRGRSTVTIREIQEEKVEDPSVCNFSNETRV---PTEDERQKH-GSGSRRRNA 363
NQI PELN GRST+TI+EIQEEK+EDP VC+FSNETRV TEDE Q+H GSGSR NA
Sbjct: 65 NQIGPELNTGRSTLTIKEIQEEKIEDPPVCSFSNETRVLTPATEDESQRHGGSGSRSINA 124
Query: 364 ELVGEQSGKSEWDSHRNIGSIHKPANIELQNSSNIDTSVPRGHLQASFNRSFRSRAV-SS 422
EL GE KSE DSH GS+H+P N ELQN S+ID+SV R H QAS NRSFR A SS
Sbjct: 125 ELGGEHCEKSECDSHWGTGSVHRPVNPELQNPSSIDSSVLRAHSQASSNRSFRPPAASSS 184
Query: 423 SMVRTMAPTSPPGSRPRHPEVPLAVASRLRTGVPRSPGMPTSERLGM--SPTSLFTAPPV 480
S+VRTM PTS GSRP+H VA RLRTG PRSPG+P ER GM +PT LF AP V
Sbjct: 185 SIVRTMCPTSFVGSRPQH------VAPRLRTGTPRSPGIPIYERFGMIRAPTPLFMAPAV 238
Query: 481 RIRSVVPVCSAPPGRSIAEVXXXXXXXXXXXXXXXXXRTSSELGHLRL 528
RIRSVVPVCSAPP RS+AEV RTSSELGHLR+
Sbjct: 239 RIRSVVPVCSAPPRRSMAEVSQSKEKEDLKPEDKEVPRTSSELGHLRI 286
>Glyma12g29420.1
Length = 411
Score = 241 bits (614), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 116/182 (63%), Positives = 139/182 (76%), Gaps = 1/182 (0%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
MYKN+LQELAQRSCFNLP+Y+CIREGPDHAPRFKATVNFNGE FESP +CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 61 AEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYS 120
AEVALN+ + RGPS +LAA++LDETGVYKNLLQE A R G LP YTT RSG GH+P ++
Sbjct: 61 AEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPHYTTYRSGLGHLPVFT 120
Query: 121 CTVEIAGMHFTGDPARTXXXXXXXXXXXXXXXLRKLPRLHLSSS-ESKGNEEQEQVIIAR 179
VE+AG+ FTG+PA+ L++L + SSS E + N+E EQ+ IAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKETASSSTEPENNDELEQITIAR 180
Query: 180 VL 181
L
Sbjct: 181 AL 182
>Glyma12g08070.1
Length = 401
Score = 239 bits (609), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 115/182 (63%), Positives = 138/182 (75%), Gaps = 1/182 (0%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
MYKN+LQELAQRSCFNLP+Y+CIREGPDHAPRFKATVNFNGE FESP +CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 61 AEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYS 120
AEVALN+ + R PS +LAAR+LDETGVYKNLLQE A R G LP Y T RSG GH+P ++
Sbjct: 61 AEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFT 120
Query: 121 CTVEIAGMHFTGDPARTXXXXXXXXXXXXXXXLRKLPR-LHLSSSESKGNEEQEQVIIAR 179
TVE+AG+ FTG+PA+ L++L + SS+E + N+E EQ+ IAR
Sbjct: 121 GTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIAR 180
Query: 180 VL 181
L
Sbjct: 181 AL 182
>Glyma11g20530.1
Length = 411
Score = 239 bits (609), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 115/182 (63%), Positives = 138/182 (75%), Gaps = 1/182 (0%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
MYKN+LQELAQRSCFNLP+Y+CIREGPDHAPRFKATVNFNGE FESP +CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 61 AEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYS 120
AEVALN+ + R PS +LAAR+LDETGVYKNLLQE A R G LP Y T RSG GH+P ++
Sbjct: 61 AEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFT 120
Query: 121 CTVEIAGMHFTGDPARTXXXXXXXXXXXXXXXLRKLPR-LHLSSSESKGNEEQEQVIIAR 179
TVE+AG+ FTG+PA+ L++L + SS+E + N+E EQ+ IAR
Sbjct: 121 GTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIAR 180
Query: 180 VL 181
L
Sbjct: 181 AL 182
>Glyma13g40070.1
Length = 479
Score = 236 bits (602), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 114/182 (62%), Positives = 138/182 (75%), Gaps = 1/182 (0%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
MYKN+LQELAQRSCFNLP+Y+CIREGPDHAPRFKATVNFNGE FE+P +CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFETPHYCSTLRQAEHSA 60
Query: 61 AEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYS 120
AE ALN+ + RGPS +LAA++LDETGVYKNLLQE A R G LP YTT RSG GH+P ++
Sbjct: 61 AEAALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPHYTTYRSGLGHLPVFT 120
Query: 121 CTVEIAGMHFTGDPARTXXXXXXXXXXXXXXXLRKLPRLHLSSS-ESKGNEEQEQVIIAR 179
VE+AG+ FTG+PA+ L++L + SSS E + N+E EQ+ IAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKETASSSTEPENNDEVEQITIAR 180
Query: 180 VL 181
L
Sbjct: 181 AL 182
>Glyma06g34600.1
Length = 150
Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 92/136 (67%), Positives = 111/136 (81%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
MYKN+LQELAQRSCFNLP+Y IREGP+HAPRFKAT+ FNGE FE+P +CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYMSIREGPNHAPRFKATIKFNGEIFETPHYCSTLRQAEHSA 60
Query: 61 AEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYS 120
AEV LN+ + RGPS +LA ++LDETGVYKNL+QE A R G LP Y T RSG GH+P +
Sbjct: 61 AEVPLNSLSHRGPSHSLATKILDETGVYKNLVQEIAQRVGAPLPHYITYRSGLGHLPIFI 120
Query: 121 CTVEIAGMHFTGDPAR 136
VE+ G+ FTG+PA+
Sbjct: 121 RIVELTGITFTGEPAK 136
>Glyma05g10870.1
Length = 140
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 83/137 (60%), Gaps = 7/137 (5%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
MYK RLQEL QR + LP Y REGPDH PRF +TVN NG +F +P+ + +QA++ A
Sbjct: 1 MYKTRLQELCQRRSWTLPTYDNSREGPDHNPRFTSTVNVNGVSFHTPSPTRSAKQAQNDA 60
Query: 61 AEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYS 120
A +A F+ PS G+YKNLLQE A + G LP+Y T +SG H+P +
Sbjct: 61 AMLAFLHFSPPSPSTG-------HVGLYKNLLQELAQKEGFRLPIYNTNKSGEAHMPIFV 113
Query: 121 CTVEIAGMHFTGDPART 137
VE+ G FTG+ A++
Sbjct: 114 SQVEVEGELFTGEEAKS 130
>Glyma04g10230.1
Length = 359
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 79/139 (56%), Gaps = 3/139 (2%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFES-PTFCSTLRQAEHA 59
++K+RLQE AQ++ P Y I+EGP H P F++TV N ++S P F + + AE +
Sbjct: 15 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNR-KAAEQS 73
Query: 60 AAEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRS-GPGHVPN 118
AAEVAL + + + ETG+ KNLLQE A + +P+Y + PG
Sbjct: 74 AAEVALVELVKSNAVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASV 133
Query: 119 YSCTVEIAGMHFTGDPART 137
+SCTV+I G+ + G A+T
Sbjct: 134 FSCTVDIGGILYIGGAAKT 152
>Glyma06g10200.2
Length = 359
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 79/139 (56%), Gaps = 3/139 (2%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFES-PTFCSTLRQAEHA 59
++K+RLQE AQ++ P Y I+EGP H P F++TV N ++S P F + + AE +
Sbjct: 15 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNR-KAAEQS 73
Query: 60 AAEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRS-GPGHVPN 118
AAEVAL + + + ETG+ KNLLQE A + +P+Y + PG
Sbjct: 74 AAEVALVELIKSNLVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASV 133
Query: 119 YSCTVEIAGMHFTGDPART 137
+SCTV+I G+ + G A+T
Sbjct: 134 FSCTVDIGGILYIGGAAKT 152
>Glyma06g10200.1
Length = 363
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 80/146 (54%), Gaps = 13/146 (8%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFES-PTFCSTLRQAEHA 59
++K+RLQE AQ++ P Y I+EGP H P F++TV N ++S P F + + AE +
Sbjct: 15 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNR-KAAEQS 73
Query: 60 AAEVALNTFAERGPSRALAARVLD-------ETGVYKNLLQETAHRAGLNLPVYTTIRS- 111
AAEVAL E S + + ETG+ KNLLQE A + +P+Y +
Sbjct: 74 AAEVAL---VELIKSNLVNQSITQPVCFFQHETGLCKNLLQEYAQKMNYAMPMYQCKKDE 130
Query: 112 GPGHVPNYSCTVEIAGMHFTGDPART 137
PG +SCTV+I G+ + G A+T
Sbjct: 131 TPGRASVFSCTVDIGGILYIGGAAKT 156
>Glyma14g07600.1
Length = 459
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 4/139 (2%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
MYKNRLQE +S N P Y I EG DH+P+F++TV + S + S + AEH A
Sbjct: 26 MYKNRLQEFTSKSGINFPVYQTINEGQDHSPKFRSTVWVADMGYTSQSTFSHKKAAEHEA 85
Query: 61 AEVALNTFAERGPSRALAARVLDETGVY-KNLLQETAHRAGLNLPVYTTIRSGPGHV-PN 118
A +AL + +R +R ++++ + K+++ E A + + P Y T + G V P
Sbjct: 86 ARLALESILKR--TRDEGLSLVNQISPFSKSIMNEYADKLHVEQPTYNTDQQQLGGVLPI 143
Query: 119 YSCTVEIAGMHFTGDPART 137
+ ++ G +TGDPART
Sbjct: 144 FITSLVFNGTSYTGDPART 162
>Glyma08g42580.1
Length = 319
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 12/135 (8%)
Query: 3 KNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAAAE 62
KN+ Q AQ++ + P ++C E D P N ++ ESP F +T+++ + AAA+
Sbjct: 77 KNQPQNNAQKNNLDPPVFTCKTE--DLPPT-------NEQSVESPDFFNTIKEVDQAAAK 127
Query: 63 VALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYSCT 122
+ L + + P A +L ++G +K L + R + P Y T+++G H+P + T
Sbjct: 128 LDLMSLS---PDNFEKASILGDSGSFKTSLLRLSERQDFHKPTYKTMQAGSPHMPTFFST 184
Query: 123 VEIAGMHFTGDPART 137
VE+ G+ F G R+
Sbjct: 185 VEVEGVEFHGKGGRS 199
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 48/107 (44%), Gaps = 12/107 (11%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
MYK +LQEL + + LP YS +++GPDH P FKA+V N F S F H
Sbjct: 1 MYKAKLQELCHQRKWGLPRYSAMKDGPDHMPSFKASVYVNRVTFTSGAFSDHF----HFP 56
Query: 61 AEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYT 107
+ N + P D KN Q A + L+ PV+T
Sbjct: 57 IQHLSNNINQLIPP--------DMDRYCKNQPQNNAQKNNLDPPVFT 95
>Glyma18g50130.1
Length = 90
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%)
Query: 2 YKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAAA 61
YK RLQ Q+ +LP Y + EG H P+F++TV +G + SP S LR AE A
Sbjct: 10 YKTRLQSFTQKCNISLPMYINVNEGRQHDPKFRSTVWVDGMKYTSPNTFSRLRAAEADVA 69
Query: 62 EVAL 65
+AL
Sbjct: 70 RMAL 73