Miyakogusa Predicted Gene

Lj1g3v4955320.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4955320.1 Non Chatacterized Hit- tr|D7L318|D7L318_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,49.47,0.00000000002,seg,NULL; coiled-coil,NULL,CUFF.33705.1
         (352 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g40270.1                                                       223   2e-58
Glyma19g42880.1                                                       166   4e-41

>Glyma03g40270.1 
          Length = 626

 Score =  223 bits (568), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 162/349 (46%), Positives = 187/349 (53%), Gaps = 18/349 (5%)

Query: 1   MDRRRMQYDRQKXXXXXXXXXXXXXXXXXXLNRHSRAGSTGSAMINARRTQNTATKAAAQ 60
           MDRRR+ YDRQ                   L+RH+RAGSTGSAM N RR QN ATKAAAQ
Sbjct: 1   MDRRRI-YDRQNSSSGTPSSPSSPVNMISPLHRHARAGSTGSAMTNVRRAQNNATKAAAQ 59

Query: 61  RLAQVMSHSSSGIXXXXXXXXXXIALDYSAAXXXXXXXXXXXX---XXXXMSVRSVQDQP 117
           RLAQVMSH+              + LDYSA                    M+VRSVQD  
Sbjct: 60  RLAQVMSHTDD-----DDEDEDDVPLDYSAIAGGGGIGLGGGRPMPARSPMAVRSVQDAA 114

Query: 118 PAPRSRSPM-SVRSAQEQPPSARSRSPMTVRSAQEQPLSARARSPLTVRTAQEQPIXXXX 176
            A RSRSP+ +VRS QEQ PSARSRSP +VRS QEQP SAR+RSP +VR  QE P     
Sbjct: 115 SA-RSRSPLPAVRSVQEQ-PSARSRSPASVRSVQEQPPSARSRSPASVRMGQEPPQSVRG 172

Query: 177 XXXXXXXXXXXXXXDQTPTRTSTAGSQAEQQQPPSARSTGAIRTLDFSPSARTIAISRVP 236
                         +Q P RT T  + AE QQPPSAR T   RTL+ SPSARTI I+R P
Sbjct: 173 MPSVRSSASSNALAEQPPPRTPTLTNNAE-QQPPSARLTPGNRTLELSPSARTIIITRSP 231

Query: 237 S-GNVSNDQXXXXXXXXXXXXXLSKXXXXXXXXXXITLRPASSMGIPPLEPPFDIKRDRR 295
              + +NDQ             LSK          ITLRP SS+G+PP EP  DI++DRR
Sbjct: 232 QPSSANNDQPPSARSTSGRPSGLSKVVPMVPPSVPITLRPVSSVGVPPSEPLLDIRKDRR 291

Query: 296 LSLDLGSMKVRENVPQQQRPTSXXXXXXXXXXXXXXXXVEKLRLAEERC 344
            +    +  VREN  QQQRPTS                V+KLRLAEE+C
Sbjct: 292 HA----AATVRENANQQQRPTSELEDELDMLQEENDNLVDKLRLAEEKC 336


>Glyma19g42880.1 
          Length = 666

 Score =  166 bits (419), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 129/322 (40%), Positives = 155/322 (48%), Gaps = 30/322 (9%)

Query: 31  LNRHSRAGSTGSAMINARRTQNTATKAAAQRLAQVMSHSSSGIXXXXXXXXXXIALDYSA 90
           L+RH+RAGSTGSAM N RR QN ATKAAAQRLAQVMS +              + LDYSA
Sbjct: 20  LHRHARAGSTGSAMTNVRRAQNNATKAAAQRLAQVMSQTDD-----DDEDEDDVPLDYSA 74

Query: 91  AXXXXXXXXXXXXXXXXMSVRSVQDQPPAPRSRSPM-------SVRSAQEQPPSARSRSP 143
                                      P P +RSPM        ++            S 
Sbjct: 75  IAGSGGIGLGGGR--------------PMP-TRSPMIKITVLLCLKVCFRLSLLFLLASS 119

Query: 144 MTVRSAQEQPLSARARSPLTVRTAQEQPIXXXXXXXXXXXXXXXXXXDQTPTRTSTAGSQ 203
              R+     ++    + + +R  QEQP                   +Q P RT T  + 
Sbjct: 120 RCSRTTSICEITFPRGNCIFLRIDQEQPRSVRGMSSVRSYASSNALAEQPPPRTPTLMNN 179

Query: 204 AEQQQPPSARSTGAIRTLDFSPSARTIAISRVPS-GNVSNDQXXXXXXXXXXXXXLSKXX 262
           AEQQ PPSARST A RTL+ SPSART  I+R P   + +NDQ             LSK  
Sbjct: 180 AEQQ-PPSARSTPANRTLELSPSARTTIITRSPQPSSANNDQPPSARSTSGRPSGLSKVV 238

Query: 263 XXXXXXXXITLRPASSMGIPPLEPPFDIKRDRRLSLDLGSMKVRENVPQQQRPTSXXXX- 321
                   ITLRPASS+G+PP EP  DI++D+RLSLDLGSMKVREN  QQQRPTS     
Sbjct: 239 PMVPPSVPITLRPASSVGVPPSEPLLDIRKDKRLSLDLGSMKVRENANQQQRPTSHELED 298

Query: 322 XXXXXXXXXXXXVEKLRLAEER 343
                       V+KLRLAEE+
Sbjct: 299 ELDMLQEENDNLVDKLRLAEEK 320