Miyakogusa Predicted Gene

Lj1g3v4919900.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4919900.1 Non Chatacterized Hit- tr|I0YUM6|I0YUM6_9CHLO
Uncharacterized protein (Fragment) OS=Coccomyxa
subell,51.04,0.000000000000006,Rad9,Rad9/Ddc1; seg,NULL; SUBFAMILY NOT
NAMED,NULL; DNA REPAIR PROTEIN RAD9,Rad9,CUFF.33611.1
         (302 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g42210.1                                                       458   e-129
Glyma03g39590.1                                                       442   e-124

>Glyma19g42210.1 
          Length = 449

 Score =  458 bits (1179), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 224/303 (73%), Positives = 252/303 (83%), Gaps = 3/303 (0%)

Query: 1   MNRLLSNFQSSLQEITVIATEPASLPPDSANDIGGKAVELRSYIDPTKDNDSSLHTQLWI 60
           ++RLL+NFQSSLQEIT+IATEP+SLP D++N+IGGKAVELRSY+DPTKDND+ LHTQLWI
Sbjct: 148 LSRLLANFQSSLQEITIIATEPSSLPLDASNEIGGKAVELRSYMDPTKDNDTLLHTQLWI 207

Query: 61  DPKEEFLQYVHTGDPIDVTFSVKELKAFLSFCEGCEVDIHFHFEKAGEPILMAPKFGLED 120
           DPKEEFLQYVHTGDPIDVTFSVKELKAFLSFCEGCEVD+H HFEKAGEPILMAPKFGLED
Sbjct: 208 DPKEEFLQYVHTGDPIDVTFSVKELKAFLSFCEGCEVDLHLHFEKAGEPILMAPKFGLED 267

Query: 121 GSHSNFDATLVLATMLTSQLHEGAASEPLVVDARTHAQTEERNGSHAEEENCRTN-TSEL 179
           GSHSNFDATLVLATML SQLHEGAASEPL    RTH  TEERN S+ ++ENCR N +SEL
Sbjct: 268 GSHSNFDATLVLATMLISQLHEGAASEPLAGATRTHPHTEERNASYMQQENCRANVSSEL 327

Query: 180 QSDHTRVWSDLSATAVKNMSGLEERPAQEQTVLNDNEQREIQRISTIRISRKTSAAGNNP 239
            SDHTR+WSDLS +A K++S LEER AQ +T+LND+ QRE+QRIST++IS  TS  GNNP
Sbjct: 328 PSDHTRIWSDLSVSAFKSISPLEERRAQGETILNDDRQREMQRISTMQISGLTSVPGNNP 387

Query: 240 TGSNICRPTEKDSVQAPQDMLQDNNQAFSQHHPSNWVXXXXXXXXXXXXXXQYIQATPPY 299
             SN+  PTEKD  Q PQD +QDN QA SQHH SNWV              QYIQ TPPY
Sbjct: 388 IDSNV--PTEKDHGQEPQDAMQDNGQAISQHHRSNWVDAEEDDEDEQDEDDQYIQPTPPY 445

Query: 300 YED 302
           YE+
Sbjct: 446 YEE 448


>Glyma03g39590.1 
          Length = 449

 Score =  442 bits (1136), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/303 (72%), Positives = 245/303 (80%), Gaps = 3/303 (0%)

Query: 1   MNRLLSNFQSSLQEITVIATEPASLPPDSANDIGGKAVELRSYIDPTKDNDSSLHTQLWI 60
           ++RLL+NFQSSLQEIT+IATEP+SL  D++N+IGGK VELRSY+DPTKDND+ LHTQLWI
Sbjct: 148 LSRLLANFQSSLQEITIIATEPSSLLTDASNEIGGKEVELRSYMDPTKDNDTLLHTQLWI 207

Query: 61  DPKEEFLQYVHTGDPIDVTFSVKELKAFLSFCEGCEVDIHFHFEKAGEPILMAPKFGLED 120
           DPKEEFLQYVHTGDPIDVTFSVKELKAFLSFCEGCEVD+H HFEKAGEPILMAPKFGLED
Sbjct: 208 DPKEEFLQYVHTGDPIDVTFSVKELKAFLSFCEGCEVDLHLHFEKAGEPILMAPKFGLED 267

Query: 121 GSHSNFDATLVLATMLTSQLHEGAASEPLVVDARTHAQTEERNGSHAEEENCRTNTS-EL 179
           GSHSNFDATLVLATML SQLHEGAASEP V    TH  TEERN SH  +ENCR N S E 
Sbjct: 268 GSHSNFDATLVLATMLISQLHEGAASEPPVGATGTHPHTEERNASHMLQENCRANVSFEP 327

Query: 180 QSDHTRVWSDLSATAVKNMSGLEERPAQEQTVLNDNEQREIQRISTIRISRKTSAAGNNP 239
            SDHTR+WSDLSA+A K++S LEER AQ +T+LND+ QREIQRIST++IS   S  GNNP
Sbjct: 328 PSDHTRIWSDLSASAFKSISPLEERQAQGETILNDDGQREIQRISTMQISGVASVPGNNP 387

Query: 240 TGSNICRPTEKDSVQAPQDMLQDNNQAFSQHHPSNWVXXXXXXXXXXXXXXQYIQATPPY 299
             SN+  PTEKD  Q PQD +QDN QA SQHH SNWV              Q IQ TPPY
Sbjct: 388 IDSNV--PTEKDHGQEPQDAMQDNGQAISQHHRSNWVDAEEDDEDEQDEDEQDIQPTPPY 445

Query: 300 YED 302
           YE+
Sbjct: 446 YEE 448