Miyakogusa Predicted Gene

Lj1g3v4765230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4765230.1 tr|B9MZM0|B9MZM0_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_595514 PE=4
SV=1,35.79,1e-17,seg,NULL; ZF_C3H1,Zinc finger, CCCH-type; no
description,NULL; Frigida,Frigida-like; zf-CCCH,Zinc fi,CUFF.33215.1
         (347 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g11690.1                                                       119   7e-27

>Glyma11g11690.1 
          Length = 369

 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/212 (38%), Positives = 106/212 (50%), Gaps = 36/212 (16%)

Query: 18  VELEATSDPAKV----------------GKVFIMDSGHIFLLEQLLRISPHIKPCVRGEA 61
           V L  +SDPAK+                    I+D  HI LLEQL+RISP +KP VR EA
Sbjct: 63  VNLHTSSDPAKLVLDIILVPIASEKQGSEGAIIIDESHILLLEQLMRISPRVKPRVREEA 122

Query: 62  MKLARDLEGNMRTSSKNPLEVXXXXXXXXXXXXXXXXXXXXXXXXXXXA----------- 110
           +K+A  L+ N+R S++N L +                           A           
Sbjct: 123 LKIAFALKANIRESAENSLTILGFLLLLSAYGLVSYFRKDELFKQLESAAQHKQAVELFR 182

Query: 111 -----DKSSGFIQNLVKKQQHIEAVRFICAFKLADKNQPVDLLWKYMQNAKLVSENTT-- 163
                DK   F++NL+ KQQHIEAVRFICA+KLADK QPVDLL +++   K V+      
Sbjct: 183 TLGFVDKIFDFVRNLIMKQQHIEAVRFICAYKLADKIQPVDLLRQHVAKVKSVTNRFACM 242

Query: 164 --SLEIQDKARDQEVATLTNVLLSISDNKLES 193
             S+E + K RD+E+  L  VL  IS+N LES
Sbjct: 243 KESVEQKIKVRDEEIVGLRTVLECISENNLES 274