Miyakogusa Predicted Gene

Lj1g3v4765020.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4765020.1 Non Chatacterized Hit- tr|D8TJX6|D8TJX6_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,34.55,0.00002,coiled-coil,NULL; rRNA_processing,rRNA processing;
seg,NULL,CUFF.33313.1
         (188 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g39440.1                                                       153   8e-38
Glyma03g36780.1                                                       141   4e-34

>Glyma19g39440.1 
          Length = 217

 Score =  153 bits (387), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 92/188 (48%), Positives = 105/188 (55%), Gaps = 5/188 (2%)

Query: 1   MTKNTDERSSGGDHHKNQLKKKKNVSRLGGSGLSLAAFAKAKSRNNNYNPAIIKRQKEFH 60
           M KN   RS   D  K  + KKKN+SRLGGSGLSL AFA AKS+NN YNPAIIK+Q+EF+
Sbjct: 33  MKKNDKVRS---DKQKQIMTKKKNISRLGGSGLSLDAFANAKSKNNLYNPAIIKKQREFY 89

Query: 61  KNAKNVNKFKKMMKRENQPNDPALAQRLIENLNETXXXXXXXXXXXXXXXXSAFSXXXXX 120
           KNAKNVNKFKK++K++NQ NDP+LAQRL EN+NET                SA S     
Sbjct: 90  KNAKNVNKFKKLVKQQNQQNDPSLAQRLKENVNET--EENKDKSERRKRKNSALSLEELY 147

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKKTRKGQPVMKYRIEHLLET 180
                                                   KKTRKGQPVMKYRIEHLLET
Sbjct: 148 KKQHEEKEKERMEKEAVLRVKKEDREQAEAQRKAMREKMLKKTRKGQPVMKYRIEHLLET 207

Query: 181 INAADKKS 188
           I  + K S
Sbjct: 208 IQGSTKSS 215


>Glyma03g36780.1 
          Length = 191

 Score =  141 bits (356), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 80/163 (49%), Positives = 93/163 (57%), Gaps = 2/163 (1%)

Query: 24  NVSRLGGSGLSLAAFAKAKSRNNNYNPAIIKRQKEFHKNAKNVNKFKKMMKRENQPNDPA 83
           NVSRLGGSGLSL AFA AK +NN+YNPAIIK+Q+EF+KNAKNVNKFKK++K++NQ N+P+
Sbjct: 24  NVSRLGGSGLSLNAFANAKFKNNHYNPAIIKKQREFYKNAKNVNKFKKLVKQQNQQNEPS 83

Query: 84  LAQRLIENLNETXXXXXXXXXXXXXXXXSAFSXXXXXXXXXXXXXXXXXXXXXXXXXXXX 143
           LAQR IEN+NET                SA S                            
Sbjct: 84  LAQRHIENVNET--EENKDDSERRKRKNSALSLEELYKKQHEEKEKEIMEREAVLRVKKE 141

Query: 144 XXXXXXXXXXXXXXXXFKKTRKGQPVMKYRIEHLLETINAADK 186
                            KKTRKGQPVMKYRIEHLLETI  + K
Sbjct: 142 EREQAEARRKAMREKMLKKTRKGQPVMKYRIEHLLETIQGSTK 184