Miyakogusa Predicted Gene

Lj1g3v4753360.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4753360.1 tr|G7IP72|G7IP72_MEDTR Exosome complex
exonuclease RRP45 OS=Medicago truncatula GN=MTR_2g019210
PE=4,81.96,0,Ribosomal protein S5 domain 2-like,Ribosomal protein S5
domain 2-type fold; Ribonuclease PH domain 2,CUFF.33142.1
         (448 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g01740.1                                                       607   e-174
Glyma01g43760.1                                                       525   e-149
Glyma16g26780.1                                                       102   1e-21
Glyma02g07710.1                                                       101   2e-21
Glyma14g22250.2                                                        95   2e-19
Glyma08g27080.1                                                        91   2e-18
Glyma14g22250.1                                                        87   3e-17
Glyma18g50270.1                                                        85   2e-16

>Glyma11g01740.1 
          Length = 1058

 Score =  607 bits (1565), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 310/434 (71%), Positives = 351/434 (80%), Gaps = 14/434 (3%)

Query: 1    MEQRLANSWRMTVNEKKFIETALLSELRVDGRGPLEYRRLTIKFGKDDGSAMVQLGETRV 60
            MEQRLAN+WRM +N+KKFIETALLS+LR+DGR P +YR+LT+K  K DGSA V LG+T V
Sbjct: 621  MEQRLANTWRMPLNDKKFIETALLSDLRLDGRRPSDYRKLTVKLAKQDGSAEVHLGQTHV 680

Query: 61   MSFVTAQLVQPYRDRPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRA 120
            M+FVTAQLV+PYRDRPNEGSLSIFTEFSPMADPSF+PGRP ++AVELGRV+DRGLRESRA
Sbjct: 681  MTFVTAQLVRPYRDRPNEGSLSIFTEFSPMADPSFDPGRPSDAAVELGRVVDRGLRESRA 740

Query: 121  VDTESLCVLSGQLVWAVRIDIHIXXXXXXXXXXXXXXXXXXXXTFRRPECSLGGEDGQKV 180
            +DTESLCVLSG+LVWA+R+DIHI                    TFRRPECSL GEDGQ V
Sbjct: 741  IDTESLCVLSGKLVWAIRVDIHILDNAGNLVDAANIAALASLLTFRRPECSLAGEDGQDV 800

Query: 181  VVHPPEVRDPLPLIIHHLPIAVTFGFFSDEYLVIMDPTYQEESVMTGRMTATVNANGDVC 240
            VVHPPE RDP+PLIIHHLPIAVTFGFFS+E L+++DPT+ EE VMTGRMTAT+N+NGDVC
Sbjct: 801  VVHPPEERDPIPLIIHHLPIAVTFGFFSNENLLVIDPTHHEECVMTGRMTATLNSNGDVC 860

Query: 241  AIQKAGGQGVLQKLIMHCLRLAHVKAGDITTKIKEAVEKHNTERALRKIKRH-SSVSVDV 299
            AIQK GG+ V   +IMHCL+LAHVKA DITTKI++AVE HN ERALRKIKRH SSV+VDV
Sbjct: 861  AIQKPGGESVSHSVIMHCLKLAHVKATDITTKIRDAVEIHNNERALRKIKRHSSSVAVDV 920

Query: 300  CGTTARLGEKQNPLDGDKDGSCLD-QLKLKDEGNFMECEATPSGHVQSSQGDGVSKNFTG 358
            C      GEKQN L    D S LD     ++E + MECEA+PSG  QS   DGVSKNFTG
Sbjct: 921  C------GEKQNQL----DASHLDKLKLEEEEESPMECEASPSGQEQSK--DGVSKNFTG 968

Query: 359  GPSSWDPYSECVNSDLLKASLASRGPSGNVKQKDSGSAPKPEEAPQEIKKDSSPIDTALA 418
            GPSSWDPYSECVNSDLLKASLASRGPS   KQKDS    KP+E P EIK DS+PI+ AL 
Sbjct: 969  GPSSWDPYSECVNSDLLKASLASRGPSVPSKQKDSRRETKPKEPPLEIKTDSTPINKALT 1028

Query: 419  AEQNNEGKTLKDAV 432
            A QNN+GKTLKDAV
Sbjct: 1029 AGQNNKGKTLKDAV 1042


>Glyma01g43760.1 
          Length = 350

 Score =  525 bits (1353), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 257/364 (70%), Positives = 287/364 (78%), Gaps = 19/364 (5%)

Query: 1   MEQRLANSWRMTVNEKKFIETALLSELRVDGRGPLEYRRLTIKFGKDDGSAMVQLGETRV 60
           MEQRLAN+WRM  N+ KFIETALLS+LRVDGR P +YR+LTIK  K DGSA V LG+T V
Sbjct: 1   MEQRLANTWRMPRNDNKFIETALLSDLRVDGRRPSDYRKLTIKLAKQDGSAEVHLGQTHV 60

Query: 61  MSFVTAQLVQPYRDRPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRA 120
           ++FVTAQLV+PYRDRPNEGSLSIFTEFSPMADPSFEPGRP ++AVELGRV+DRGLRESRA
Sbjct: 61  ITFVTAQLVRPYRDRPNEGSLSIFTEFSPMADPSFEPGRPTDAAVELGRVVDRGLRESRA 120

Query: 121 VDTESLCVLSGQLVWAVRIDIHIXXXXXXXXXXXXXXXXXXXXTFRRPECSLGGEDGQKV 180
           +DTESLCVLSG+LVWA+R+DIHI                    TFRRPECSL GEDGQ V
Sbjct: 121 IDTESLCVLSGKLVWAIRVDIHILDNAGNLVDAANIAALVSLLTFRRPECSLTGEDGQDV 180

Query: 181 VVHPPEVRDPLPLIIHHLPIAVTFGFFSDEYLVIMDPTYQEESVMTGRMTATVNANGDVC 240
           VVHPPE RDP+PLIIHHLPIAVTFGFFS+E L+++DPT+ EE VMTGRMTAT+N+NGDVC
Sbjct: 181 VVHPPEERDPIPLIIHHLPIAVTFGFFSNENLLVIDPTHHEECVMTGRMTATLNSNGDVC 240

Query: 241 AIQKAGGQGVLQKLIMHCLRLAHVKAGDITTKIKEAVEKHNTERALRKIKRH-SSVSVDV 299
           AIQK GG+ V Q +IMHCL+LAHVKA DITTKIK+AVE HN ER LRKIKRH SS +VDV
Sbjct: 241 AIQKPGGESVSQSVIMHCLKLAHVKATDITTKIKDAVEIHNNERMLRKIKRHSSSAAVDV 300

Query: 300 CGTTARLGEKQNPLDGDKDGSCLDQLKLKDEGNFMECEATPSGHVQSSQGDGVSKNFTGG 359
           CG TA  G KQNPLDGD                 +EC ATPSG  Q    DG SKNFTGG
Sbjct: 301 CGATAGFGGKQNPLDGDD----------------LECRATPSG--QQHSKDGASKNFTGG 342

Query: 360 PSSW 363
           PSSW
Sbjct: 343 PSSW 346


>Glyma16g26780.1 
          Length = 286

 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 131/267 (49%), Gaps = 18/267 (6%)

Query: 11  MTVNEKKFIETALLSELRVDGRGPLEYRRLTIKFG---KDDGSAMVQLGETRVMSFVTAQ 67
           +++ E  FI+  +  +LR DGR  L YR ++++ G   + +GSA V++G T V++ V A+
Sbjct: 4   LSLGETHFIQGGIAQDLRCDGRKRLTYRPISVETGVIPQTNGSARVRMGATDVIASVKAE 63

Query: 68  LVQPYRDRPNEGSLSIFTEFSPMADPSFEPGRPG-ESAVELGRVIDRGLRESRA-----V 121
           L +P   +P++G +SI+ + S  A+P+FE GR G E A EL   + R L   ++     +
Sbjct: 64  LGKPSLLQPDKGKVSIYVDCSSTAEPAFE-GRGGDELAAELSNALQRCLLGGKSGAGAGI 122

Query: 122 DTESLCVLSGQLVWAVRIDIHIXXXXXXXXXXXXXXXXXXXXTFRRPECSLGGEDGQKVV 181
           D  SL V+ G++ W + ID  +                        P   +    G    
Sbjct: 123 DLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVQVAA--GTSND 180

Query: 182 VHPP-EVRDP--LPLIIHHLPIAVTFGFFSDEYLVIMDPTYQEESVMTGRMTATVNANGD 238
            HP  +V D   L      +P+ VT       Y+V  D T +EES M+  ++ +VN  G 
Sbjct: 181 EHPEVDVSDEEFLQFDTSRVPVIVTLTKVGRHYIV--DATSEEESQMSSAVSISVNRQGH 238

Query: 239 VCAIQKAGGQGVLQKLIMHCLRLA-HV 264
           +C I K GG G+   +I+  + +A HV
Sbjct: 239 ICGITKRGGVGLDPSIILDMISVAKHV 265


>Glyma02g07710.1 
          Length = 286

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 132/269 (49%), Gaps = 22/269 (8%)

Query: 11  MTVNEKKFIETALLSELRVDGRGPLEYRRLTIKFG---KDDGSAMVQLGETRVMSFVTAQ 67
           +++ E  FI+  +  +LR DGR  L YR ++++ G   + +GSA V++G T V++ V A+
Sbjct: 4   LSLGETHFIQGGIAQDLRCDGRKRLTYRPISVETGVIPQTNGSARVRMGATDVIASVKAE 63

Query: 68  LVQPYRDRPNEGSLSIFTEFSPMADPSFEPGRPG-ESAVELGRVIDRGLR-----ESRAV 121
           L +P   +P++G +SI+ + S  A+P+FE GR G E A EL   +   L      E   +
Sbjct: 64  LGKPSLLQPDKGKVSIYIDCSSTAEPAFE-GRGGDELAAELSNALQHCLLGGKSGEGAGI 122

Query: 122 DTESLCVLSGQLVWAVRIDIHIXXXXXXXXXXXXXXXXXXXXT--FRRPECSLGGEDGQK 179
           D  SL V+ G++ W + ID  +                         R E + G  + + 
Sbjct: 123 DLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVEVAAGTSNDE- 181

Query: 180 VVVHPP-EVRDP--LPLIIHHLPIAVTFGFFSDEYLVIMDPTYQEESVMTGRMTATVNAN 236
              HP  +V D   L      +P+ VT       Y+V  D T +EES M+  ++ +VN  
Sbjct: 182 ---HPEVDVSDEEFLQFDTSRVPVIVTLTKVGRHYIV--DATSEEESQMSSGVSISVNRQ 236

Query: 237 GDVCAIQKAGGQGVLQKLIMHCLRLA-HV 264
           G +C I K GG G+   +I+  + +A HV
Sbjct: 237 GHICGITKRGGVGLDPSIILDMISVAKHV 265


>Glyma14g22250.2 
          Length = 299

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 127/279 (45%), Gaps = 24/279 (8%)

Query: 17  KFIETALLSELRVDGRGPLEYRRLTIKFG---KDDGSAMVQLGETRVMSFVTAQLVQPYR 73
           ++ E  L   +R DGR   + R  +I  G     +GSA+V++G T +++ +  +++ P  
Sbjct: 26  RYFERHLAESIRPDGRPLGKARETSIFLGAVASANGSALVKIGSTTMLTAIKMEVMTPSL 85

Query: 74  DRPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRAVDTESLCVLSGQL 133
           + P+EG L+I     P+  P   PGRP E++  + + +   +  SR +D + L ++ G+ 
Sbjct: 86  ESPDEGCLAIDFHMPPICSPIVRPGRPAEASPVVSKQLSDTISSSRMIDLKELSLVGGKA 145

Query: 134 VWAVRIDIHIXXXXXXXXXXXXXXXXXXXXTFRRPECSL---------GGEDGQKVVVHP 184
            W   +DI+                       + P  ++          GEDGQK     
Sbjct: 146 AWMAYLDIYCLDADGALFDAALISAVAALSHLQIPAVAMNDDGKIVLVSGEDGQK----- 200

Query: 185 PEVRDPLPLIIHHLPIAVTFGFFSDEYLVIMDPTYQEESVMTGRMTATVNANGDVCAIQK 244
           P  ++   L +  +P ++T     +   ++ DPT +EES+M   +T  ++ +G + ++ K
Sbjct: 201 PVNKEKRKLTLRSIPFSLTCILHKN--YILADPTAEEESIMETHVTIVLDTSGQLISLYK 258

Query: 245 AGGQGV-LQKLIMHCLRLAHVKAGDITTKIKEAVEKHNT 282
            GG  +     I  C+ L     G    ++K  ++K N+
Sbjct: 259 PGGPALAYTSAIQDCVGL----TGQRVKELKSYLDKENS 293


>Glyma08g27080.1 
          Length = 302

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 115/243 (47%), Gaps = 15/243 (6%)

Query: 17  KFIETALLSELRVDGRGPLEYRRLTIKFG---KDDGSAMVQLGETRVMSFVTAQLVQPYR 73
           ++ E  L   +R DGR   + R  +I  G     +GSA+V++G T +++ +  +++ P  
Sbjct: 26  RYFERHLAESIRPDGRPLGKARETSIFLGAVASANGSALVKIGSTTILTAIKMEVMTPSL 85

Query: 74  DRPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRAVDTESLCVLSGQL 133
           + P+EG L+I     P+  P   PGRP E++  + + +   +  S+ +D + L ++SG+ 
Sbjct: 86  ESPDEGCLAIDFHMPPICSPIVRPGRPAEASPVVSKQLSDTISSSKMIDLKELSLVSGKA 145

Query: 134 VWAVRIDIHIXXXXXXXXXXXXXXXXXXXXTFRRPECSLGGEDGQKVVV---------HP 184
            W   +DI+                       + P  ++  +DG+ V+V           
Sbjct: 146 AWMAYLDIYCLDADGALFDAALLSAVASLSHLQIPVVAM-NDDGKIVLVSEEDGQKREQE 204

Query: 185 PEVRDPLPLIIHHLPIAVTFGFFSDEYLVIMDPTYQEESVMTGRMTATVNANGDVCAIQK 244
           P  ++   L +  +P ++T     +   ++ DPT +EES+M   +T  ++ +G + ++ K
Sbjct: 205 PVNKEKRKLTLRSIPFSLTCILHKN--YILADPTAEEESIMETHVTVVLDTSGQLISLYK 262

Query: 245 AGG 247
            GG
Sbjct: 263 PGG 265


>Glyma14g22250.1 
          Length = 307

 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 127/287 (44%), Gaps = 32/287 (11%)

Query: 17  KFIETALLSELRVDGRGPLEYRRLTIKFG---KDDGSAMVQLGETRVMSFVTAQLVQPYR 73
           ++ E  L   +R DGR   + R  +I  G     +GSA+V++G T +++ +  +++ P  
Sbjct: 26  RYFERHLAESIRPDGRPLGKARETSIFLGAVASANGSALVKIGSTTMLTAIKMEVMTPSL 85

Query: 74  DRPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRAVDTESLCVLSGQL 133
           + P+EG L+I     P+  P   PGRP E++  + + +   +  SR +D + L ++ G+ 
Sbjct: 86  ESPDEGCLAIDFHMPPICSPIVRPGRPAEASPVVSKQLSDTISSSRMIDLKELSLVGGKA 145

Query: 134 VWAVRI--------DIHIXXXXXXXXXXXXXXXXXXXXTFRRPECSL---------GGED 176
            W   +        DI+                       + P  ++          GED
Sbjct: 146 AWMAYLNAAFSIMQDIYCLDADGALFDAALISAVAALSHLQIPAVAMNDDGKIVLVSGED 205

Query: 177 GQKVVVHPPEVRDPLPLIIHHLPIAVTFGFFSDEYLVIMDPTYQEESVMTGRMTATVNAN 236
           GQK     P  ++   L +  +P ++T     +   ++ DPT +EES+M   +T  ++ +
Sbjct: 206 GQK-----PVNKEKRKLTLRSIPFSLTCILHKN--YILADPTAEEESIMETHVTIVLDTS 258

Query: 237 GDVCAIQKAGGQGV-LQKLIMHCLRLAHVKAGDITTKIKEAVEKHNT 282
           G + ++ K GG  +     I  C+ L     G    ++K  ++K N+
Sbjct: 259 GQLISLYKPGGPALAYTSAIQDCVGL----TGQRVKELKSYLDKENS 301


>Glyma18g50270.1 
          Length = 311

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 112/253 (44%), Gaps = 25/253 (9%)

Query: 17  KFIETALLSELRVDGRGPLEYRRLTIKFGK---DDGSAMVQLGETRVMSFVTAQLVQPYR 73
           ++ E  L   +R DGR   + R  +I  G     +GSA+V++G T +++ +  +++ P  
Sbjct: 26  RYFERHLAESIRADGRPLGKARETSIFLGAVAFANGSALVKIGSTTMLTAIKMEIMTPSL 85

Query: 74  DRPNEGSL----------SIFTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRAVDT 123
           + P+EG L          SI     P+  P   PGRP E++  + + +   +  SR  D 
Sbjct: 86  ESPDEGCLDWLLLVGPLMSIDFHMPPICSPIVRPGRPAEASPMVSKQLSNTISSSRMTDL 145

Query: 124 ESLCVLSGQLVWAVRIDIHIXXXXXXXXXXXXXXXXXXXXTFRRPECSL---------GG 174
           + L ++SG+  W   +DI+                       + P  ++           
Sbjct: 146 KELSLVSGKAAWMAYLDIYCLDADGALFDAALLSAIAALSHLQIPSIAMNDDGKIVLVSD 205

Query: 175 EDGQKVVVHPPEVRDPLPLIIHHLPIAVTFGFFSDEYLVIMDPTYQEESVMTGRMTATVN 234
           EDGQK    P   ++   L +  +P ++T     +   ++ DPT +EES+M   +T  ++
Sbjct: 206 EDGQKRAQEPVN-KEKRKLTLRSIPFSLTCILHKN--YILADPTAEEESIMETHVTVVLD 262

Query: 235 ANGDVCAIQKAGG 247
            +G + ++ K GG
Sbjct: 263 TSGQLISLYKPGG 275