Miyakogusa Predicted Gene
- Lj1g3v4694420.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4694420.1 tr|F4K3N3|F4K3N3_ARATH Small RNA degrading
nuclease 3 OS=Arabidopsis thaliana GN=SDN3 PE=4
SV=1,44.85,4e-18,RNase_T,Exonuclease, RNase T/DNA polymerase III;
Ribonuclease H-like,Ribonuclease H-like domain; no ,CUFF.33291.1
(445 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma17g18400.1 639 0.0
Glyma10g08050.1 314 1e-85
Glyma16g21170.1 204 1e-52
Glyma13g09210.1 120 3e-27
Glyma14g27300.1 82 8e-16
Glyma13g34800.1 78 2e-14
Glyma12g35630.1 77 4e-14
Glyma12g35630.2 71 3e-12
Glyma13g42740.1 64 4e-10
Glyma15g02690.1 63 5e-10
Glyma19g11090.1 59 2e-08
>Glyma17g18400.1
Length = 509
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/425 (72%), Positives = 358/425 (84%), Gaps = 3/425 (0%)
Query: 1 MRHHSNQYSVEKLKDKSHVSPEQGLVQITLQHPLYPLDYSFQSIDEGWVIINLRKNKKAM 60
MRHHSNQY +E+LKDKSH SPEQ LVQ TLQHPLYPLDYSF SIDEGW+++N + K M
Sbjct: 78 MRHHSNQYMLERLKDKSHDSPEQRLVQATLQHPLYPLDYSFPSIDEGWIVVNFKNKPKVM 137
Query: 61 RSTAMVAVDCEMVLCEDGTEALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVSSRD 120
+ST MVAVDCEMVLCEDGTEA+V+VCVVDHNL+VKL K VKPDK I DYRTE+TGVSS+D
Sbjct: 138 KSTEMVAVDCEMVLCEDGTEAVVKVCVVDHNLEVKLDKLVKPDKEIADYRTEITGVSSQD 197
Query: 121 LETVTCTLADIQKKMKRLLSNGTILVGHSLDNDLRVLKLDHVRVVDTAYIFQSLDGSIHR 180
LE VTC+LADIQK MK+LLS+G ILVGHSL NDLRVLKLDHVRV+DT+YIFQSLDGSIH+
Sbjct: 198 LEAVTCSLADIQKYMKKLLSSGIILVGHSLHNDLRVLKLDHVRVIDTSYIFQSLDGSIHK 257
Query: 181 KPSLNGLCQAVLGYEVREKGAPHNCLDDACAAMKLVLARIKHGVDKEFPFTLVQEHVSES 240
+PSLN LCQAVL +EVREKGAPHNCLDDA AAM LVLA+IKHGVDKEFP LVQEHV ES
Sbjct: 258 RPSLNSLCQAVLHHEVREKGAPHNCLDDAKAAMDLVLAKIKHGVDKEFPIALVQEHVPES 317
Query: 241 DMTKLLLHGIPTSVNIETLHKIVPGDFTTEVKPSRKGQRAKYSALATFKNQQEAYEAYEN 300
++ KLLLH IP +VNIETLHKI+PG+F E+KPSRKGQ A YSA A F++ EA AYEN
Sbjct: 318 ELAKLLLHKIPNTVNIETLHKILPGNFKIELKPSRKGQGANYSAFAIFRSPPEADGAYEN 377
Query: 301 VQGSQTKDSFGRPQKEVMFQPSTGMTVSLFVRKMTADEPDNLLQSKRALQVDEADEAVNA 360
VQGSQ KD++G PQK V F+ STG++V+LFVRKM +EP++ SKRALQ+ +EAV+
Sbjct: 378 VQGSQLKDTYGHPQKLVTFRLSTGLSVNLFVRKMVTEEPNDQTPSKRALQI---NEAVDV 434
Query: 361 SKKAKTVPQIEEDALIGSTKGDTCTHLKEIEALNEQLKQKDLEIESLREQLRKRDFEVSK 420
SKKAK P+IEEDA G KGDT H KEIEALN+QLKQ ++ IESLR+QL ++DFE+S
Sbjct: 435 SKKAKMDPKIEEDASAGFGKGDTDAHSKEIEALNQQLKQSEMVIESLRKQLTQKDFEISM 494
Query: 421 LHIMI 425
LH MI
Sbjct: 495 LHKMI 499
>Glyma10g08050.1
Length = 302
Score = 314 bits (804), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 152/231 (65%), Positives = 186/231 (80%), Gaps = 5/231 (2%)
Query: 46 EGWVIINLRKNKKAMRSTAMVAVDCEMVLCEDGTEALVEVCVVDHNLKVKLHKRVKPDKA 105
+GW++IN + K ++ST MV VDCEMVLCED TEA+V+VCVVDHN + L + VKP+K
Sbjct: 40 KGWIVINFKNKPKVIKSTEMVVVDCEMVLCEDETEAVVKVCVVDHNFSLCLEELVKPNKE 99
Query: 106 IVDYRTEVTGVSSRDLETVTCTLADIQKKMKRLLSNGTILVGHSLDNDLRVLKLDHVRVV 165
I DYRT++TGVSS+DLE VTC++ADIQK M +LLS+G ILVGHSL NDL +LKLDHV+V+
Sbjct: 100 IADYRTKITGVSSQDLEAVTCSMADIQKYMNKLLSSGIILVGHSLPNDL-LLKLDHVKVI 158
Query: 166 DTAYIFQSLDGSIHRKPSLNGLCQAVLGYE----VREKGAPHNCLDDACAAMKLVLARIK 221
+T+YIFQSLDGSIH++PSLN LCQA E + K + CLDDA AAM LVLA+IK
Sbjct: 159 NTSYIFQSLDGSIHKRPSLNSLCQATTPLEESCCLECKFISNCCLDDAKAAMDLVLAKIK 218
Query: 222 HGVDKEFPFTLVQEHVSESDMTKLLLHGIPTSVNIETLHKIVPGDFTTEVK 272
HGVDKEFP LVQEHVS+S++ KLLLH IP +VNIETLHKI+PGDF E+K
Sbjct: 219 HGVDKEFPIALVQEHVSKSELAKLLLHKIPNTVNIETLHKILPGDFKIELK 269
>Glyma16g21170.1
Length = 307
Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/273 (45%), Positives = 156/273 (57%), Gaps = 44/273 (16%)
Query: 13 LKDKSHVSPEQGLVQITLQHPLYPLDYSFQSID-----EGWVIINLRKNKKAMRSTAMVA 67
L D + + E + Q + +H + Y+F I ++I + K STAM
Sbjct: 57 LLDITDLFIEIVMTQNSNEHFCFHFTYTFILIGLFISINYEIVIKFKNKPKVTNSTAMFV 116
Query: 68 VDCEMVLCEDGTEALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVSSRDLETVTCT 127
+DCEMVL ED +ALV+V +L+K VKPDK I
Sbjct: 117 IDCEMVLNEDKAKALVKV--------FQLNKLVKPDKEI--------------------- 147
Query: 128 LADIQKKMKRLLSNGTILVGHSLDNDLRVLKLDHVRVVDTAYIFQSLDGSIHRKPSLNGL 187
K M++ LS G ILVGHSL ND+ +K+DHVRVV+T+YIFQSLD SIHR+PSL+ L
Sbjct: 148 -----KYMQKFLSKGIILVGHSLHNDVCEMKVDHVRVVETSYIFQSLDESIHRRPSLDSL 202
Query: 188 CQAVLGYE-----VREKGAPHNCLDDACAAMKLVLARIKHGVDKEFPFTLVQEHVSESDM 242
+ E EKG PHNCLDD CA+M L L +I+H VD EFP LVQEHV ES+M
Sbjct: 203 YRRKTEMENIDLRFIEKGVPHNCLDDVCASMGLFLVKIEHVVDIEFPILLVQEHVLESEM 262
Query: 243 TKLLLHGIPTSVNIETLHKIVPGDFTTEVKPSR 275
++LL H IP +VN ETLHKIV GDF E+K R
Sbjct: 263 SRLLRHKIPNTVNNETLHKIVLGDFKIELKVVR 295
>Glyma13g09210.1
Length = 611
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 101/159 (63%), Gaps = 2/159 (1%)
Query: 65 MVAVDCEMVLCEDGTEALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVSSRDLETV 124
M+A+DCEM + +G E L + +VD +V + K VKP AI DY T +G++S L+ V
Sbjct: 228 MLALDCEMCITSEGFE-LTRITLVDVKGQVLIDKLVKPSNAITDYNTRFSGITSEMLDGV 286
Query: 125 TCTLADIQKKMKRLLSNGTILVGHSLDNDLRVLKLDHVRVVDTAYIFQSLDGSIHRKPSL 184
T +L DIQ++ +L+ TILVGHSL+NDL L + H V+DTA +++ GS H K +L
Sbjct: 287 TTSLRDIQEEFIKLVYKETILVGHSLENDLLALNISHDSVIDTAVLYKHPRGSSH-KNAL 345
Query: 185 NGLCQAVLGYEVREKGAPHNCLDDACAAMKLVLARIKHG 223
L + L E+++ G H+ ++DA A M+L L +I++G
Sbjct: 346 RFLTKRFLSREIQQSGNGHDSIEDARATMELALLKIRNG 384
>Glyma14g27300.1
Length = 302
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 81/134 (60%), Gaps = 5/134 (3%)
Query: 121 LETVTCTLADIQKKMKRLLSNGTILVGHSLDNDLRVLKLDHVRVVDTAYIFQSLDGSIHR 180
L+ VT +L DIQ++ +L+ TILVGHSL+NDL LK+ H V+DTA +++ GS H
Sbjct: 2 LDGVTTSLRDIQEEFLKLVHKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSTH- 60
Query: 181 KPSLNGLCQAVLGYEVREKGAPHNCLDDACAAMKLVLARIKHGVDKEFPFTLVQEH---- 236
K +L L + L E+++ G H+ ++DA A M+L L +I++G + P + ++
Sbjct: 61 KNALRFLTKRFLSREIQQSGNGHDSIEDARATMELALLKIRNGPNFGSPPSFTRKKLLSI 120
Query: 237 VSESDMTKLLLHGI 250
+SES T L+ I
Sbjct: 121 LSESGKTSSLIDDI 134
>Glyma13g34800.1
Length = 266
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 86/156 (55%), Gaps = 8/156 (5%)
Query: 63 TAMVAVDCEMVLCEDGTE-ALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVSSRDL 121
T VA+DCEMV G + AL V +V+ V + V+P + +VD+RT+++G+ RDL
Sbjct: 72 TDAVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTKISGIRPRDL 131
Query: 122 ETVTCTLADIQKKMKRLLSNGTILVGHSLDNDLRVLKLDHVR--VVDTAYIFQSLDGSIH 179
A QKK+ L+ NG ILVGH+L NDL+ L L H R + DT+ L+ S
Sbjct: 132 RKAKDFWA-AQKKVAELI-NGRILVGHALSNDLKALLLSHPRKDIRDTSEYRPFLNRSSS 189
Query: 180 RKPSLNGLCQAVLGYEVREKGAPHNCLDDACAAMKL 215
R+ +L L LG + + H ++DA AAM L
Sbjct: 190 RR-ALRHLAAEHLGVNI--QTGEHCPVEDARAAMLL 222
>Glyma12g35630.1
Length = 265
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 84/156 (53%), Gaps = 9/156 (5%)
Query: 63 TAMVAVDCEMVLCEDGTE-ALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVSSRDL 121
T VA+DCEMV G + AL V +V+ V + V+P + +VD+RT+++G+ RDL
Sbjct: 72 TDAVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTKISGIRPRDL 131
Query: 122 ETVTCTLADIQKKMKRLLSNGTILVGHSLDNDLRVLKLDHVR--VVDTAYIFQSLDGSIH 179
A QKK+ L+ NG ILVGH+L NDL+ L L H R + DT+ L S
Sbjct: 132 RKAKDFWA-AQKKVAELI-NGRILVGHALSNDLKALLLSHPRKDIRDTSEYQPFLKSSSR 189
Query: 180 RKPSLNGLCQAVLGYEVREKGAPHNCLDDACAAMKL 215
R +L L LG ++ H ++DA AAM L
Sbjct: 190 R--ALRHLAAKHLGVNIQT--GEHCPIEDARAAMLL 221
>Glyma12g35630.2
Length = 221
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Query: 63 TAMVAVDCEMVLCEDGTE-ALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVSSRDL 121
T VA+DCEMV G + AL V +V+ V + V+P + +VD+RT+++G+ RDL
Sbjct: 72 TDAVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTKISGIRPRDL 131
Query: 122 ETVTCTLADIQKKMKRLLSNGTILVGHSLDNDLRVLKLDHVR 163
A QKK+ L+ NG ILVGH+L NDL+ L L H R
Sbjct: 132 RKAKDFWA-AQKKVAELI-NGRILVGHALSNDLKALLLSHPR 171
>Glyma13g42740.1
Length = 366
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 91/179 (50%), Gaps = 23/179 (12%)
Query: 55 KNKKAMRSTAMVAVDCEMVLC-EDGT-EALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTE 112
+N VA+DCEMV DG+ E VC+VD + ++ H V+P+ + +YR +
Sbjct: 129 ENHAGEGPGGAVAIDCEMVGGGSDGSLELCARVCLVDEDERLIFHTYVQPEIPVTNYRYD 188
Query: 113 VTGVSSRDLETVTCTLADIQKKMKRLLSNGT-------------ILVGHSLDNDLRVLKL 159
+TG++ L+ L +++K+ ++L NG +LVGH L +DL LK+
Sbjct: 189 ITGLTEEHLKNAI-PLKKVREKLLQILQNGESIGKVRLDGGKARLLVGHDLAHDLDCLKM 247
Query: 160 ---DHVRVVDTAYIFQSLDGSIHRKPSLNGLCQAVLGYEVREKGAPHNCLDDACAAMKL 215
DH+ + DTA ++ L + SL L + LGY++ + H+ +D + M+L
Sbjct: 248 NYPDHM-LRDTAK-YRPLMKTNLVSHSLKYLTRTYLGYDI--QSGTHDPYEDCISVMRL 302
>Glyma15g02690.1
Length = 366
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 91/179 (50%), Gaps = 23/179 (12%)
Query: 55 KNKKAMRSTAMVAVDCEMVLC-EDGT-EALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTE 112
+N VA+DCEMV DG+ E VC+VD + ++ H V+P+ + +YR +
Sbjct: 129 ENHAGEGPGGAVAMDCEMVGGGSDGSLELCARVCLVDEDERLIFHTYVQPEIPVTNYRYD 188
Query: 113 VTGVSSRDLETVTCTLADIQKKMKRLLSNGT-------------ILVGHSLDNDLRVLKL 159
+TG++ L L ++++K+ ++L NG +LVGH L +DL LK+
Sbjct: 189 ITGLTEEHLRNAM-PLKEVREKLLQILHNGESIGKVRLDGGKARLLVGHDLAHDLDCLKM 247
Query: 160 ---DHVRVVDTAYIFQSLDGSIHRKPSLNGLCQAVLGYEVREKGAPHNCLDDACAAMKL 215
DH+ + DTA ++ L + SL L + LGY++ + H+ +D + M+L
Sbjct: 248 NYPDHM-LRDTAK-YRPLMKTNLVSHSLKYLTRTYLGYDI--QSGTHDPYEDCISVMRL 302
>Glyma19g11090.1
Length = 346
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 21/138 (15%)
Query: 51 INLRKN---KKAMRSTAMVAVDCEMVLC-EDGT-EALVEVCVVDHNLKVKLHKRVKPDKA 105
+ LR N R +VA+ C+MV DG+ + VC++D + + H VKP
Sbjct: 115 LGLRDNLAIGGGARGPQVVALACKMVGGGSDGSLDLCARVCLIDEHENIIFHSYVKPPIP 174
Query: 106 IVDYRTEVTGVSSRDLETVTCTLADIQKKMKRLLSNG-------------TILVGHSLDN 152
+ +YR E TG++ L + +Q+++ L NG ILVGH LD+
Sbjct: 175 VANYRYETTGITPEYLRDAM-PMRHVQRRIHDFLCNGEPMWTIRARGGRARILVGHGLDH 233
Query: 153 DLRVLKLDHV--RVVDTA 168
DL L++++ ++ DTA
Sbjct: 234 DLESLQIEYRAEKIRDTA 251