Miyakogusa Predicted Gene

Lj1g3v4690380.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4690380.1 Non Chatacterized Hit- tr|D8R0G4|D8R0G4_SELML
Putative uncharacterized protein OS=Selaginella
moelle,31.25,0.00000000004,seg,NULL; PH DOMAIN CONTAINING
PROTEIN,NULL; VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN
(VPS13),Vac,gene.g37022.t1.1
         (364 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g04260.1                                                       508   e-144
Glyma18g14440.1                                                       116   5e-26

>Glyma11g04260.1 
          Length = 4131

 Score =  508 bits (1309), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 272/417 (65%), Positives = 296/417 (70%), Gaps = 70/417 (16%)

Query: 1   MQLKPEALNALKLPVKVKAGFLGSVKLKEDIVIANADTGITYQPLVPWSRLGQDPVLVYL 60
           MQLKPEALNALKLPVKVKAGFLGSVKL+                 VPWSRLGQDPVLVYL
Sbjct: 40  MQLKPEALNALKLPVKVKAGFLGSVKLQ-----------------VPWSRLGQDPVLVYL 82

Query: 61  DRIFLLAEPATQVEGCSEDAVQEAKKIRIEFLKFSL---PLSLQYGDGIETMGEVTTTKV 117
           DRIFLLAEPATQVEGCSEDAVQEAKK  I+ ++  L      L+       +G + +T +
Sbjct: 83  DRIFLLAEPATQVEGCSEDAVQEAKKSLIQEMELKLWEKSQQLKSEMNKSWLGSLISTII 142

Query: 118 RN-------------------GHPFAAGVMLDKLSAVTVDDTGKETFITGGALDLIQKSV 158
            N                   GHPFAAGVMLDKL AVTVDD+GKETFITGGALD IQKSV
Sbjct: 143 GNLKLSISNIHIRYEDGESNPGHPFAAGVMLDKLLAVTVDDSGKETFITGGALDRIQKSV 202

Query: 159 ELDRLAVYLDSDIIPWHASKEWEDLLPSEWFQIFKFGTKDGKPADRLLQKHSYVLEPVTG 218
           ELDRLAVYLDSDIIPWH +K WEDLLPSEWFQIFKFGTKDGKPAD LL+KHSY+L+PVTG
Sbjct: 203 ELDRLAVYLDSDIIPWHVNKAWEDLLPSEWFQIFKFGTKDGKPADNLLRKHSYLLQPVTG 262

Query: 219 KGNYSKLLLNEVADSKQPLQKAVVNLDDVTISLSKDGYRDIMKLADNFAAFNQRLKYAHF 278
           K  YSKLL  EVADSKQPLQKA+VNLDDVTIS+SKDGY DIMKLADNFAAFNQRLKYAH+
Sbjct: 263 KAKYSKLLPTEVADSKQPLQKAMVNLDDVTISISKDGYGDIMKLADNFAAFNQRLKYAHY 322

Query: 279 RPPVPVKADPRSWWKYAYRAVSDQMKKAS------------------------------- 307
           RP VPVKAD RSWWKYAY+AVSDQ+KKAS                               
Sbjct: 323 RPLVPVKADSRSWWKYAYKAVSDQIKKASGKMSWEQVLRYASLRKRYISLYASLLKSDPT 382

Query: 308 QVTISGNKXXXXXXXXXXXXXXXQWRMLAHKFVEQSAEPNLSVRKQKAGNSWWSFGW 364
           QVTISGNK               QWRML+HK +E+SAE N ++RKQKA  SWWSFGW
Sbjct: 383 QVTISGNKEIEDLDRELDIELILQWRMLSHKLLEKSAESNHNMRKQKAQKSWWSFGW 439


>Glyma18g14440.1 
          Length = 89

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 62/91 (68%), Positives = 67/91 (73%), Gaps = 7/91 (7%)

Query: 216 VTGKGNYSKLLLNEVADSKQPLQKAVVNLDDVTISLSKDGYRDIMKLADNFAAFNQRLKY 275
           VT K  YSKLL  EVADSKQPLQKA+VNLDDVTI +SKDGY DI+ LADNFAAFNQ    
Sbjct: 1   VTRKAKYSKLLPIEVADSKQPLQKAIVNLDDVTIIISKDGYEDIIILADNFAAFNQ---- 56

Query: 276 AHFRPPVPVKADPRSWWKYAYRAVSDQMKKA 306
              R  VPVK    SWWKYA RAVS+Q+K  
Sbjct: 57  ---RSLVPVKVASGSWWKYANRAVSNQIKSC 84