Miyakogusa Predicted Gene

Lj1g3v4690370.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4690370.1 Non Chatacterized Hit- tr|D8R0G4|D8R0G4_SELML
Putative uncharacterized protein OS=Selaginella moelle,33.93,1e-18,PH
DOMAIN CONTAINING PROTEIN,NULL; VACUOLAR PROTEIN SORTING-ASSOCIATED
PROTEIN (VPS13),Vacuolar prot,gene.g37021.t1.1
         (214 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g04260.1                                                       286   8e-78

>Glyma11g04260.1 
          Length = 4131

 Score =  286 bits (733), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 137/158 (86%), Positives = 146/158 (92%)

Query: 24  WNRLNKIIGYKEGDDGQSPVNSKADVMHTFLVVHMNHNASKLIGEAQDLVAELSCEDLSC 83
           WN+LNKIIGYKEGDDGQ  VNSKADV+HTFL VHMNHNASKLIGE ++ VAELSCEDLSC
Sbjct: 458 WNQLNKIIGYKEGDDGQLAVNSKADVIHTFLEVHMNHNASKLIGETKESVAELSCEDLSC 517

Query: 84  SVKLYPETKVFDIKLGSYQLSSPKGLLAESAASFDSLVGVFKYKPFDDKVDWSMVAKASP 143
           S+ LYPETKVFDIKLGSY+LSSPKGLLAESA S+DSLVGVF YKPFDDKVDW MVAKASP
Sbjct: 518 SIILYPETKVFDIKLGSYKLSSPKGLLAESATSYDSLVGVFHYKPFDDKVDWRMVAKASP 577

Query: 144 CYMTYMKDSINQIVKFFETNATVSQTIALETAAAVQST 181
           CYMTYMKDSI+QIVKFFE+N  VSQTIALETAAAVQ T
Sbjct: 578 CYMTYMKDSIDQIVKFFESNTAVSQTIALETAAAVQMT 615