Miyakogusa Predicted Gene

Lj1g3v4614460.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4614460.1 Non Chatacterized Hit- tr|A5C6I8|A5C6I8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,47.86,2e-18,zf-RING_2,Zinc finger, RING-type; no description,Zinc
finger, RING/FYVE/PHD-type; RFWD3 PROTEIN-RELA,CUFF.32857.1
         (414 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g34180.1                                                       324   1e-88
Glyma03g34190.1                                                       196   5e-50
Glyma18g45160.1                                                       115   1e-25
Glyma19g36880.1                                                       108   1e-23
Glyma08g30570.1                                                        82   1e-15
Glyma16g03580.1                                                        53   7e-07
Glyma19g36890.1                                                        52   2e-06
Glyma10g20490.1                                                        52   2e-06

>Glyma03g34180.1 
          Length = 604

 Score =  324 bits (830), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 187/335 (55%), Positives = 221/335 (65%), Gaps = 52/335 (15%)

Query: 66  YIPVAPSHRVSPNVHQNPTSDSVEVILIPDSEQQNYSEEDGNKRRRIEEGEAPTSSLG-- 123
           Y+P     RVS +  +  TS+S  V LI          E  NKRRR E GEA  S     
Sbjct: 60  YVPAGAPPRVSHDAPRVSTSNSEVVTLI----------ESQNKRRRTEGGEASCSFANGS 109

Query: 124 -SQGNELTGTDIDGLVCPICMDAWTNNGEHHICCLPCGHVYGMSCINKWLQHRKSSGKCP 182
            SQ NE    D+DGL+CPICMDAWTNNGEHHICCLPCGH+YGMSCI KWLQHR++S KCP
Sbjct: 110 LSQENEWASPDVDGLLCPICMDAWTNNGEHHICCLPCGHIYGMSCIKKWLQHRRNSNKCP 169

Query: 183 QCKSKCSLKDVRKLYASRLVAVDGNLHKRIRSLEDKCSGLESKDGQWNKKEAEWKKRETV 242
           QCK KCSLKDVRKLYAS++VAV+    KRIRSLE KC+ LESK    +KKEA W+K+E  
Sbjct: 170 QCKVKCSLKDVRKLYASQVVAVEEENQKRIRSLEAKCAALESKGSDRHKKEAGWQKKEAA 229

Query: 243 LYHEVQKLTERNTYLEQLLLLDVQNRQSEMMDGNMKPQRRYECERNWSPKSHGKGSKFCG 302
           L  +VQKLTERNTYLE  +LLD+Q+RQ                                 
Sbjct: 230 LNLQVQKLTERNTYLE--MLLDMQSRQL-------------------------------- 255

Query: 303 EEPFCNFEFREAFRVDGARLFDMDTSNDILLIARKPKAIGGEHLLTKMSLISPFEMEDIV 362
                NFE ++ F +DGAR+FDMD SN ILLIA+K KAIGG HLLTKMSL+SPFEM+DI+
Sbjct: 256 ---MFNFELQKTFDLDGARVFDMDISNQILLIAQKRKAIGGMHLLTKMSLMSPFEMQDIL 312

Query: 363 LPSTTNAIRD--LHISPSGNRLALYASLGKKLSVL 395
           LPS TN ++D  +  S S + LAL++SLGKKLSVL
Sbjct: 313 LPSGTNGVKDLHISASHSSSSLALFSSLGKKLSVL 347


>Glyma03g34190.1 
          Length = 220

 Score =  196 bits (497), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 105/178 (58%), Positives = 125/178 (70%), Gaps = 15/178 (8%)

Query: 79  VHQNPTS-DSVEVILIPDS-EQQNYSEEDG-NKRRRIE-EGEAPTSSLGSQGNELTGTDI 134
           +  NP+S +  E+I+IPD  E QN   EDG NKR R E E EA  S            DI
Sbjct: 27  ITTNPSSYNQQELIVIPDDDESQNCFREDGSNKRCRTELESEASRSK-----------DI 75

Query: 135 DGLVCPICMDAWTNNGEHHICCLPCGHVYGMSCINKWLQHRKSSGKCPQCKSKCSLKDVR 194
           D L+CPICMD WT++G+HHICCLPCGH+YG+SCI KWLQ  ++S KCPQC   CS+KDVR
Sbjct: 76  DHLLCPICMDVWTSSGDHHICCLPCGHMYGLSCIKKWLQQHRNSNKCPQCNRNCSIKDVR 135

Query: 195 KLYASRLVAVDGNLHKRIRSLEDKCSGLESKDGQWNKKEAEWKKRETVLYHEVQKLTE 252
           KLYAS  VAVD    KRIRSLE KC+ LESKD  W KKEAEW+KRE  L+ +V+KLT+
Sbjct: 136 KLYASPGVAVDEESLKRIRSLEAKCTALESKDNDWRKKEAEWQKREAALHLQVEKLTK 193


>Glyma18g45160.1 
          Length = 171

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/80 (72%), Positives = 68/80 (85%), Gaps = 1/80 (1%)

Query: 317 VDGARLFDMDTSNDILLIARKPKAIGGEHLLTKMSLISPFEMEDIVLPSTTNAIRDLHIS 376
           +DGA +FDMD SN ILLIA+K KAIGG HLLTKMSL+ PFEM+DI+LPS TN ++DLHIS
Sbjct: 1   LDGACVFDMDISNQILLIAQKRKAIGGMHLLTKMSLMFPFEMQDILLPSGTNGVKDLHIS 60

Query: 377 PS-GNRLALYASLGKKLSVL 395
            S  + LAL+ASLGKKLSVL
Sbjct: 61  ASHSSTLALFASLGKKLSVL 80


>Glyma19g36880.1 
          Length = 298

 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 72/87 (82%), Gaps = 1/87 (1%)

Query: 311 FREAFRVDGA-RLFDMDTSNDILLIARKPKAIGGEHLLTKMSLISPFEMEDIVLPSTTNA 369
           FR+   ++GA  +FDMD SN ILLIA+K +A+GG  LLTKMSL+SPFEM+ ++LPS T+ 
Sbjct: 123 FRKRLILNGAAHVFDMDISNQILLIAQKREAVGGMPLLTKMSLMSPFEMQGMLLPSGTSG 182

Query: 370 IRDLHISPSGNRLALYASLGKKLSVLR 396
           ++DL+ISPS + LAL+ASLGKKLSVLR
Sbjct: 183 VKDLYISPSHSSLALFASLGKKLSVLR 209



 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/50 (64%), Positives = 34/50 (68%), Gaps = 3/50 (6%)

Query: 110 RRIEEGEAPTSSLG---SQGNELTGTDIDGLVCPICMDAWTNNGEHHICC 156
           RR E GE   S      SQ +E   TD+DGL CPICMDAWTNNGEHHICC
Sbjct: 7   RRTEGGEVSCSFANGSMSQESEWNLTDVDGLACPICMDAWTNNGEHHICC 56


>Glyma08g30570.1 
          Length = 163

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/72 (65%), Positives = 57/72 (79%), Gaps = 1/72 (1%)

Query: 325 MDTSNDILLIARKPKAIGGEHLLTKMSLISPFEMEDIVLPSTTNAIRD-LHISPSGNRLA 383
           MD SN ILLI +K KAIGG HLLTKMSL+SPFEM++I+LPS TN I+D    +   + LA
Sbjct: 1   MDISNQILLITQKRKAIGGMHLLTKMSLMSPFEMQNILLPSGTNGIKDLHISASHSSSLA 60

Query: 384 LYASLGKKLSVL 395
           L+ASLGKKLS+L
Sbjct: 61  LFASLGKKLSML 72


>Glyma16g03580.1 
          Length = 480

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 29/146 (19%)

Query: 130 TGTDIDGLVCPICMDAWTNNGEHHICCLPCGHVYGMSCINKWLQHRKSSGK---CPQCKS 186
           +G+D  G++C IC +      E       CGHV+   C+ +W ++  S GK   CP CK 
Sbjct: 4   SGSDFAGIICSICYEPLNPINEDLQSVSICGHVFHELCLQQWFEY-SSKGKKHTCPICKQ 62

Query: 187 KCSLKDVRKLYASRLVAVD---------------GNLHKRIRSLEDKCSGLESK-DGQWN 230
            C   D  +LY   +   +               G L + ++ LE K SGL S+ +GQ  
Sbjct: 63  GCRASDACRLYFQSVGDANNSVKPSKCFELEEDAGVLRREVKRLEVKVSGLNSQVEGQTK 122

Query: 231 KKEA---------EWKKRETVLYHEV 247
           + E          E  K ET L +E 
Sbjct: 123 ELEGLNEELCTCKEQAKIETALKNEA 148


>Glyma19g36890.1 
          Length = 195

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%), Gaps = 9/67 (13%)

Query: 84  TSDSVEVILIPDSEQQNYSEEDG-NKRRRIEEGEAPTSSLGSQGNELTGTDI-DGLVCPI 141
           +S++ EVI+IPD E QN  +EDG NKRRR EE     ++  S+       DI + LVCPI
Sbjct: 22  SSNNQEVIVIPDVESQNRVQEDGSNKRRRTEEEGEAAAASHSK-------DINEPLVCPI 74

Query: 142 CMDAWTN 148
           CMD WT+
Sbjct: 75  CMDIWTS 81


>Glyma10g20490.1 
          Length = 181

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 3/56 (5%)

Query: 350 MSLISPFEMEDIVLPSTTNAIRDLHISPSGNRLALYASLGKKLSVLRYY---CMKY 402
           MSLISPFEM+DI+LPS TN ++DLHIS S +   L + +  +  V + +   CM +
Sbjct: 1   MSLISPFEMQDILLPSGTNGVKDLHISASHSTATLLSIMTYRQQVCKGFQSLCMFF 56