Miyakogusa Predicted Gene
- Lj1g3v4515780.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4515780.1 Non Chatacterized Hit- tr|C6SZB1|C6SZB1_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2
S,39.75,3e-17,RETINOIC ACID INDUCED 1/TRANSCRIPTION FACTOR 20,NULL;
zf-HC5HC2H,NULL,gene.g36666.t1.1
(407 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma19g35010.1 447 e-126
Glyma19g35010.3 447 e-126
Glyma19g35010.2 447 e-125
Glyma15g09870.1 159 5e-39
Glyma13g29220.1 159 6e-39
Glyma03g32260.1 149 4e-36
Glyma19g07300.1 98 2e-20
Glyma12g35580.1 64 3e-10
Glyma13g34850.1 63 4e-10
>Glyma19g35010.1
Length = 675
Score = 447 bits (1151), Expect = e-126, Method: Compositional matrix adjust.
Identities = 255/474 (53%), Positives = 289/474 (60%), Gaps = 106/474 (22%)
Query: 1 MEDSGKPNNKSKLMNPWMLHFQKLALELKCPLC------------------SCLVDSSLS 42
M+DSG +K+KL+NPWMLHFQKLALELKCPLC SCL D +
Sbjct: 1 MDDSG---SKTKLLNPWMLHFQKLALELKCPLCLSLFKRPVLLPCNHLFCNSCLADCITA 57
Query: 43 GSECAVCKTKYAQTD--------------------------------DSRVLQQCQTFRD 70
G CAVCK YAQTD D RVL+ CQ +
Sbjct: 58 GPGCAVCKATYAQTDVRHVPFVENVVAIYRSLDATFCASLFQPCSSGDGRVLEPCQAILN 117
Query: 71 SSYSNIKKADNFSQSSPNSNGFGVGENRKSMITMHVKPEELEMSSGGRAGFRNDVKPYPM 130
S+ S++K A ++ NSN GVG+N KS +H K EE E+S R KP PM
Sbjct: 118 STSSSLKAA-KLPRNLTNSNEVGVGKNFKSKSVVHDKAEEFELS-------RERGKPNPM 169
Query: 131 QRSRVEIGD-----YVEMDVNQVTQAAVYSPPFCDTKGSDNDCSELDSDH---------- 175
Q S +E+G +EMDVNQVTQ+A SPPFCDTKGSDND S+ S+H
Sbjct: 170 QSSHMELGGREECGVMEMDVNQVTQSAPDSPPFCDTKGSDNDFSDQGSEHPLLPGRLENS 229
Query: 176 ---RASTGKGNLKERKSQFRSESSASETDKPTRDLKRKKYLTKGDDHIQHVSTHHSKLVD 232
RA TG GNLKER Q RSESSASET+ RDLKR+K
Sbjct: 230 SLKRAGTGNGNLKERMGQLRSESSASETEGLARDLKRQK--------------------- 268
Query: 233 SHCGLDLKSGKEPGELLPANIPIDLNPSTSICSFCQSSETSEATGPMLHYANGKSVIGDA 292
LD K GKEPG LP ID+ P+ ICSFCQSS+ SEATGPMLHYANG V GDA
Sbjct: 269 ---NLDFKPGKEPGAPLPK---IDMCPTGRICSFCQSSKISEATGPMLHYANGNLVTGDA 322
Query: 293 AMQPNVIHVHRCCVDWAPQVYFVDETCKNLKAEVARGAKLKCSTCGLKGAALGCYVKSCK 352
AM+PNVI VHR C+DWAPQVYFV E KNLKAEVARGAKLKCS C LKGAALGCYVKSC+
Sbjct: 323 AMKPNVIPVHRICIDWAPQVYFVGEVVKNLKAEVARGAKLKCSKCNLKGAALGCYVKSCR 382
Query: 353 RTYHVPCAMDVSTCRWDQEKYLLLCPVHSNAKFPHEKSRPKKQATQEHPASAHL 406
RTYHVPCAMD+S CRWD E +LLLCPVHSN KFP EK R KK+ATQ+HP +HL
Sbjct: 383 RTYHVPCAMDISDCRWDHEDFLLLCPVHSNVKFPCEKIRSKKKATQKHPTFSHL 436
>Glyma19g35010.3
Length = 660
Score = 447 bits (1150), Expect = e-126, Method: Compositional matrix adjust.
Identities = 255/474 (53%), Positives = 289/474 (60%), Gaps = 106/474 (22%)
Query: 1 MEDSGKPNNKSKLMNPWMLHFQKLALELKCPLC------------------SCLVDSSLS 42
M+DSG +K+KL+NPWMLHFQKLALELKCPLC SCL D +
Sbjct: 1 MDDSG---SKTKLLNPWMLHFQKLALELKCPLCLSLFKRPVLLPCNHLFCNSCLADCITA 57
Query: 43 GSECAVCKTKYAQTD--------------------------------DSRVLQQCQTFRD 70
G CAVCK YAQTD D RVL+ CQ +
Sbjct: 58 GPGCAVCKATYAQTDVRHVPFVENVVAIYRSLDATFCASLFQPCSSGDGRVLEPCQAILN 117
Query: 71 SSYSNIKKADNFSQSSPNSNGFGVGENRKSMITMHVKPEELEMSSGGRAGFRNDVKPYPM 130
S+ S++K A ++ NSN GVG+N KS +H K EE E+S R KP PM
Sbjct: 118 STSSSLKAA-KLPRNLTNSNEVGVGKNFKSKSVVHDKAEEFELS-------RERGKPNPM 169
Query: 131 QRSRVEIGD-----YVEMDVNQVTQAAVYSPPFCDTKGSDNDCSELDSDH---------- 175
Q S +E+G +EMDVNQVTQ+A SPPFCDTKGSDND S+ S+H
Sbjct: 170 QSSHMELGGREECGVMEMDVNQVTQSAPDSPPFCDTKGSDNDFSDQGSEHPLLPGRLENS 229
Query: 176 ---RASTGKGNLKERKSQFRSESSASETDKPTRDLKRKKYLTKGDDHIQHVSTHHSKLVD 232
RA TG GNLKER Q RSESSASET+ RDLKR+K
Sbjct: 230 SLKRAGTGNGNLKERMGQLRSESSASETEGLARDLKRQK--------------------- 268
Query: 233 SHCGLDLKSGKEPGELLPANIPIDLNPSTSICSFCQSSETSEATGPMLHYANGKSVIGDA 292
LD K GKEPG LP ID+ P+ ICSFCQSS+ SEATGPMLHYANG V GDA
Sbjct: 269 ---NLDFKPGKEPGAPLPK---IDMCPTGRICSFCQSSKISEATGPMLHYANGNLVTGDA 322
Query: 293 AMQPNVIHVHRCCVDWAPQVYFVDETCKNLKAEVARGAKLKCSTCGLKGAALGCYVKSCK 352
AM+PNVI VHR C+DWAPQVYFV E KNLKAEVARGAKLKCS C LKGAALGCYVKSC+
Sbjct: 323 AMKPNVIPVHRICIDWAPQVYFVGEVVKNLKAEVARGAKLKCSKCNLKGAALGCYVKSCR 382
Query: 353 RTYHVPCAMDVSTCRWDQEKYLLLCPVHSNAKFPHEKSRPKKQATQEHPASAHL 406
RTYHVPCAMD+S CRWD E +LLLCPVHSN KFP EK R KK+ATQ+HP +HL
Sbjct: 383 RTYHVPCAMDISDCRWDHEDFLLLCPVHSNVKFPCEKIRSKKKATQKHPTFSHL 436
>Glyma19g35010.2
Length = 572
Score = 447 bits (1149), Expect = e-125, Method: Compositional matrix adjust.
Identities = 255/474 (53%), Positives = 289/474 (60%), Gaps = 106/474 (22%)
Query: 1 MEDSGKPNNKSKLMNPWMLHFQKLALELKCPLC------------------SCLVDSSLS 42
M+DSG +K+KL+NPWMLHFQKLALELKCPLC SCL D +
Sbjct: 1 MDDSG---SKTKLLNPWMLHFQKLALELKCPLCLSLFKRPVLLPCNHLFCNSCLADCITA 57
Query: 43 GSECAVCKTKYAQTD--------------------------------DSRVLQQCQTFRD 70
G CAVCK YAQTD D RVL+ CQ +
Sbjct: 58 GPGCAVCKATYAQTDVRHVPFVENVVAIYRSLDATFCASLFQPCSSGDGRVLEPCQAILN 117
Query: 71 SSYSNIKKADNFSQSSPNSNGFGVGENRKSMITMHVKPEELEMSSGGRAGFRNDVKPYPM 130
S+ S++K A ++ NSN GVG+N KS +H K EE E+S R KP PM
Sbjct: 118 STSSSLKAA-KLPRNLTNSNEVGVGKNFKSKSVVHDKAEEFELS-------RERGKPNPM 169
Query: 131 QRSRVEIGD-----YVEMDVNQVTQAAVYSPPFCDTKGSDNDCSELDSDH---------- 175
Q S +E+G +EMDVNQVTQ+A SPPFCDTKGSDND S+ S+H
Sbjct: 170 QSSHMELGGREECGVMEMDVNQVTQSAPDSPPFCDTKGSDNDFSDQGSEHPLLPGRLENS 229
Query: 176 ---RASTGKGNLKERKSQFRSESSASETDKPTRDLKRKKYLTKGDDHIQHVSTHHSKLVD 232
RA TG GNLKER Q RSESSASET+ RDLKR+K
Sbjct: 230 SLKRAGTGNGNLKERMGQLRSESSASETEGLARDLKRQK--------------------- 268
Query: 233 SHCGLDLKSGKEPGELLPANIPIDLNPSTSICSFCQSSETSEATGPMLHYANGKSVIGDA 292
LD K GKEPG LP ID+ P+ ICSFCQSS+ SEATGPMLHYANG V GDA
Sbjct: 269 ---NLDFKPGKEPGAPLPK---IDMCPTGRICSFCQSSKISEATGPMLHYANGNLVTGDA 322
Query: 293 AMQPNVIHVHRCCVDWAPQVYFVDETCKNLKAEVARGAKLKCSTCGLKGAALGCYVKSCK 352
AM+PNVI VHR C+DWAPQVYFV E KNLKAEVARGAKLKCS C LKGAALGCYVKSC+
Sbjct: 323 AMKPNVIPVHRICIDWAPQVYFVGEVVKNLKAEVARGAKLKCSKCNLKGAALGCYVKSCR 382
Query: 353 RTYHVPCAMDVSTCRWDQEKYLLLCPVHSNAKFPHEKSRPKKQATQEHPASAHL 406
RTYHVPCAMD+S CRWD E +LLLCPVHSN KFP EK R KK+ATQ+HP +HL
Sbjct: 383 RTYHVPCAMDISDCRWDHEDFLLLCPVHSNVKFPCEKIRSKKKATQKHPTFSHL 436
>Glyma15g09870.1
Length = 950
Score = 159 bits (402), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 93/133 (69%)
Query: 264 CSFCQSSETSEATGPMLHYANGKSVIGDAAMQPNVIHVHRCCVDWAPQVYFVDETCKNLK 323
C FC SSE SE +GPM+HY +G+ V D V H HR C +WAP VYF + NL+
Sbjct: 564 CIFCLSSEESETSGPMVHYLDGRPVTADYEGGSKVTHCHRNCTEWAPNVYFDGDNAINLE 623
Query: 324 AEVARGAKLKCSTCGLKGAALGCYVKSCKRTYHVPCAMDVSTCRWDQEKYLLLCPVHSNA 383
AE++R ++KCS CGLKGAALGCY KSC+R++HVPCA S CRWD + +++LCP+H+++
Sbjct: 624 AEISRSRRIKCSFCGLKGAALGCYEKSCRRSFHVPCANWTSQCRWDTQNFVMLCPLHASS 683
Query: 384 KFPHEKSRPKKQA 396
P E S +K++
Sbjct: 684 MLPCEGSGSQKRS 696
>Glyma13g29220.1
Length = 979
Score = 159 bits (402), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 93/133 (69%)
Query: 264 CSFCQSSETSEATGPMLHYANGKSVIGDAAMQPNVIHVHRCCVDWAPQVYFVDETCKNLK 323
C FC SSE SEA+GPM+HY +G+ V D V H HR C +WAP VYF + NL
Sbjct: 593 CVFCLSSEESEASGPMVHYLDGRPVTSDYEGGSKVTHCHRNCTEWAPNVYFDGDYSINLD 652
Query: 324 AEVARGAKLKCSTCGLKGAALGCYVKSCKRTYHVPCAMDVSTCRWDQEKYLLLCPVHSNA 383
AE++R ++KCS CGLKGAALGCY KSC+R++HVPCA S CRWD + +++LCP+H+++
Sbjct: 653 AEISRSRRIKCSFCGLKGAALGCYEKSCRRSFHVPCAKWTSQCRWDTQNFVMLCPLHASS 712
Query: 384 KFPHEKSRPKKQA 396
P E S +K++
Sbjct: 713 MLPCEGSGSQKRS 725
>Glyma03g32260.1
Length = 1113
Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 105/240 (43%), Positives = 127/240 (52%), Gaps = 67/240 (27%)
Query: 60 RVLQQCQTFRDSSYSNIKKADNFSQSSPNSNGFGVGENRKSMITMHVKPEELEMSSGGRA 119
RVL+ CQT +S+ S++K ++ N N +S++ H K EELE+S G R
Sbjct: 30 RVLEPCQTILNSTSSSLKTGK-LPRNLTNLN--------ESVV--HDKAEELELSCG-RG 77
Query: 120 GFRNDVKPYPMQRSRVEIGD-----YVEMDVNQVTQAAVYSPPFCDTKGSDNDCSELDSD 174
KP PMQ S++ +G +EMDVNQVTQ+A SPPFCDTKGSDNDCS+ DS+
Sbjct: 78 ------KPNPMQSSQMGLGGREQCGVMEMDVNQVTQSAPDSPPFCDTKGSDNDCSDQDSE 131
Query: 175 H--------------------RASTGKGNLKERKSQFRSESSASETDKPTRDLKRKKYLT 214
H RAS G GNLKER Q RSESS SET+ RDLKR+K
Sbjct: 132 HVRKHTLLFMVFCLLENSSLNRASAGNGNLKERMGQLRSESSVSETEGLARDLKRQK--- 188
Query: 215 KGDDHIQHVSTHHSKLVDSHCGLDLKSGKEPGELLPANIPIDLNPSTSICSFCQSSETSE 274
LD K GK+PG LP N IDL P ICSFCQSS+ SE
Sbjct: 189 ---------------------NLDFKPGKDPGAPLPTNASIDLCPIGRICSFCQSSKISE 227
>Glyma19g07300.1
Length = 124
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 73/136 (53%), Gaps = 31/136 (22%)
Query: 177 ASTGKGNLKERKSQFRSESSASETDKPTRDLKRKKYLTKGDDHIQHVSTHHSKLVDSHCG 236
ASTG GNLKER Q RS+SSASET+ RDLKR+K
Sbjct: 16 ASTGNGNLKERMGQLRSKSSASETEGLARDLKRQK------------------------N 51
Query: 237 LDLKSGKEPGELLPANIPIDLNPSTSICSFCQSS----ETSEATGPMLHYANGKSVIGDA 292
LD K GKEPG LP ID P+ IC+ ++S + ATGPMLHYANG V GDA
Sbjct: 52 LDFKPGKEPGAPLPK---IDSCPTGRICNISRASISCVLSLPATGPMLHYANGNLVTGDA 108
Query: 293 AMQPNVIHVHRCCVDW 308
AM+PNVI + W
Sbjct: 109 AMKPNVIPGTTSVLCW 124
>Glyma12g35580.1
Length = 1610
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 45/83 (54%), Gaps = 12/83 (14%)
Query: 299 IHVHRCCVDWAPQVYFVDETC-KNLKAEVARGAKLKCSTCGLKGAALGCYVKSCKRTYHV 357
I VH C W+P+VYF + C KN++A + RG LKC+ CG +GA GC
Sbjct: 331 IWVHLHCAVWSPEVYFANFGCLKNVRAALFRGRALKCTRCGRRGATTGCR---------- 380
Query: 358 PCAMDVSTCRWDQEKYLLLCPVH 380
PCA S C +D K+L+ C H
Sbjct: 381 PCAR-ASGCIFDHRKFLIACTDH 402
>Glyma13g34850.1
Length = 1788
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 12/83 (14%)
Query: 299 IHVHRCCVDWAPQVYFVDETC-KNLKAEVARGAKLKCSTCGLKGAALGCYVKSCKRTYHV 357
I VH C W+P+VYF + C KN +A + RG LKC+ CG +GA GC
Sbjct: 421 IWVHLHCAVWSPEVYFANFGCLKNARAALFRGRALKCTRCGRRGATTGCR---------- 470
Query: 358 PCAMDVSTCRWDQEKYLLLCPVH 380
PCA S C +D K+L+ C H
Sbjct: 471 PCAR-ASGCIFDHRKFLIACTDH 492