Miyakogusa Predicted Gene

Lj1g3v4485290.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4485290.1 tr|F1NAJ8|F1NAJ8_CHICK Tudor domain-containing
protein 3 OS=Gallus gallus GN=TDRD3 PE=4 SV=1,38.56,1e-18,GB DEF:
HYPOTHETICAL PROTEIN AT5G19950,NULL; FAMILY NOT NAMED,NULL;
DUF1767,Domain of unknown functi,CUFF.32494.1
         (376 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g23580.1                                                       473   e-133
Glyma04g21880.1                                                       169   6e-42

>Glyma06g23580.1 
          Length = 445

 Score =  473 bits (1217), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 261/406 (64%), Positives = 295/406 (72%), Gaps = 34/406 (8%)

Query: 1   MEENSRSVSEAGTVVLETLRGRGWCLEDTDQLKAIIVIQSALADDRSKVVDFVESELLNS 60
           MEENSR   ++G +VLETLR RGWCLEDTD+LKAII IQSALADDRS++VD VESELLNS
Sbjct: 2   MEENSRGW-DSGGMVLETLRKRGWCLEDTDRLKAIIDIQSALADDRSRLVDSVESELLNS 60

Query: 61  DLRSIGAKSLPHPSLLRNPSSHLLGPKVLQISSVRDISKXXXXXXXXXX---XXXXXXXT 117
           DLRSI AKSLP PSLLRN S+ L GPKVLQISSVRDISK                    T
Sbjct: 61  DLRSIAAKSLPQPSLLRNASTFLHGPKVLQISSVRDISKSSVDEFLKNSGDRRVLRLCLT 120

Query: 118 DGHSEITAVEYSHIPVIPDDVVPGTKIRLENKVAVHSGIACLNPKVLTVLGGVVESLYEE 177
           DGH EITAVEYSHIP IPD+VVPGTKIRLENKVAVH+GI CLNPKVLTVLGGVV+SLYEE
Sbjct: 121 DGHYEITAVEYSHIPSIPDNVVPGTKIRLENKVAVHNGIVCLNPKVLTVLGGVVQSLYEE 180

Query: 178 WQMNKKYSVFSRSSVRQLEDRDTGGPPSFVKLQVG------------------------- 212
           W+MN+KYS FSRSS+R+LE+RDTGGPP FVKLQVG                         
Sbjct: 181 WEMNQKYSGFSRSSLRKLENRDTGGPPQFVKLQVGSSSDYNSSRSRKPIAVVGEAEMRPT 240

Query: 213 SSSGYN-SRSDKPIAVVGETEMRTTGIEQNTKQKAEVLDVNLKSKLPPGRSDDKP-SSSG 270
           S++ YN SRS KPIAVVGE  +R    +Q+  QKA   D NL+SK P  R++DK  SSSG
Sbjct: 241 STADYNSSRSRKPIAVVGEAGLRPPDFQQDPNQKA---DANLQSKPPQERAEDKASSSSG 297

Query: 271 TRPKEVVESVPVXXXXXXXXXXXXXXXPYQDGRNPKGWKHRGRGRQEDPVVFTLDEYEKR 330
           TRPKEVVESVPV               P Q+ R+ +GWKHRG+G+QEDPVVFTL+EYE R
Sbjct: 298 TRPKEVVESVPVQNQAAAQKLLQKLNHPSQNDRHHRGWKHRGKGKQEDPVVFTLEEYENR 357

Query: 331 KSQAKPSIKDDVVDVSRDEDLAWQLQNQFNLEDSGVQRGSQETKAQ 376
           K+Q KPSIKD  +D+SRDE LA QLQNQ +LEDS V RG+ E KAQ
Sbjct: 358 KAQTKPSIKDWDLDISRDEHLARQLQNQLDLEDSRVGRGTYEDKAQ 403


>Glyma04g21880.1 
          Length = 150

 Score =  169 bits (427), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 79/97 (81%), Positives = 87/97 (89%)

Query: 117 TDGHSEITAVEYSHIPVIPDDVVPGTKIRLENKVAVHSGIACLNPKVLTVLGGVVESLYE 176
           TDGH EIT VEYSHIP IP++VV GTKI LENKVAVHSGI CLNPKVLTVLGGVV+SLYE
Sbjct: 5   TDGHYEITTVEYSHIPSIPNNVVLGTKIHLENKVAVHSGIVCLNPKVLTVLGGVVQSLYE 64

Query: 177 EWQMNKKYSVFSRSSVRQLEDRDTGGPPSFVKLQVGS 213
           EW+MN+KYS FSRSS+R+LE+RDTGGPP FVKLQ  S
Sbjct: 65  EWEMNQKYSGFSRSSLRKLENRDTGGPPQFVKLQAIS 101