Miyakogusa Predicted Gene

Lj1g3v4480290.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4480290.2 tr|Q25BJ5|Q25BJ5_BRAOL Basic helix-loop-helix
(BHLH) family transcription factor OS=Brassica
olerace,31.3,1e-18,seg,NULL; bHLH-MYC_N,Transcription factor MYC/MYB
N-terminal; EGL3 (ENHANCER OF GLABRA3), DNA BINDIN,CUFF.32504.2
         (235 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g03950.1                                                       355   2e-98
Glyma13g18130.1                                                       273   1e-73
Glyma07g06090.1                                                        67   2e-11
Glyma08g01810.1                                                        64   2e-10
Glyma16g02690.1                                                        64   2e-10
Glyma03g01180.1                                                        63   3e-10
Glyma19g44570.1                                                        63   3e-10
Glyma08g36720.1                                                        62   5e-10
Glyma03g41900.1                                                        55   6e-08
Glyma07g07740.1                                                        55   1e-07
Glyma05g37770.1                                                        53   2e-07
Glyma01g12740.1                                                        52   4e-07
Glyma09g33730.1                                                        52   4e-07
Glyma01g02250.1                                                        52   5e-07

>Glyma10g03950.1 
          Length = 504

 Score =  355 bits (912), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 176/236 (74%), Positives = 189/236 (80%), Gaps = 1/236 (0%)

Query: 1   MHMFYLTSAYYVFGFNSQCGPGSSFKCSKSIWASEAASCLNQYESRSFLAKLAGFQTVVF 60
           + MFYL+S  Y+FGF+S CGPGSSFK  K IWAS+AA CLNQ ESRSFL KLAG  TVVF
Sbjct: 138 LLMFYLSSMCYIFGFDSLCGPGSSFKSGKFIWASDAAGCLNQLESRSFLGKLAGLHTVVF 197

Query: 61  VPFKGGGVELGSKEMMPEEQGVLDMVRATFGESSSAQGKVLPKIFGHELSLGDTKSQSIT 120
           VP K G VELGS EM+PEEQGV++MVR  FGESS  Q KV PKIFGHELSLGDTKSQSIT
Sbjct: 198 VPLKSGVVELGSFEMVPEEQGVVEMVRTAFGESSPGQAKVFPKIFGHELSLGDTKSQSIT 257

Query: 121 ISFSPKVEDDSGFTSDSYEVQALGVNHAYGNSSNGCIGDG-EAKMFPQLNQMIPGNFNPQ 179
           ISFSPKVEDD GFTSDSYEVQALGVNHAYGNSSNG +GDG E  +FPQLNQM+ GNFN Q
Sbjct: 258 ISFSPKVEDDPGFTSDSYEVQALGVNHAYGNSSNGTLGDGNEGTLFPQLNQMMAGNFNAQ 317

Query: 180 ARVSSLDLGNEDASSPHLDDXXXXXXXXXXXXXXEEPLNHVEAERQRREKLNQRFY 235
           ARV  LDLGNED+SS H D+              EEPLNHVEAERQRREKLNQRFY
Sbjct: 318 ARVPCLDLGNEDSSSIHADERKPKKRGRKPANGREEPLNHVEAERQRREKLNQRFY 373


>Glyma13g18130.1 
          Length = 321

 Score =  273 bits (699), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 139/189 (73%), Positives = 147/189 (77%), Gaps = 2/189 (1%)

Query: 49  LAKLAGFQTVVFVPFKGGGVELGSKEMMPEEQGVLDMVRATFGESSSAQGKVLPKIFGHE 108
           + KLAG QTVVFVP K G VELGS EM+PEE GV++MVR  FGESS  Q KV PKIFGHE
Sbjct: 1   MGKLAGLQTVVFVPLKSGVVELGSLEMVPEEHGVVEMVRTAFGESSPGQAKVFPKIFGHE 60

Query: 109 LSLGDTKSQSITISFSPKVEDDSGFTSDSYEVQALGVNHAYGNSSNGCIG-DGEAKMFPQ 167
           LSLGDTKSQSITISFSPKVEDD GFTSDSYEVQALGVNHAYGNSSNG +G   E KMFPQ
Sbjct: 61  LSLGDTKSQSITISFSPKVEDDPGFTSDSYEVQALGVNHAYGNSSNGTLGVSNEGKMFPQ 120

Query: 168 LNQMIPGNFNPQAR-VSSLDLGNEDASSPHLDDXXXXXXXXXXXXXXEEPLNHVEAERQR 226
           LNQM+ GNFN Q   V  LDLGNED+SS H D+              EEPLNHVEAERQR
Sbjct: 121 LNQMMAGNFNAQGSGVPCLDLGNEDSSSIHADERKPRKRGRKPANGREEPLNHVEAERQR 180

Query: 227 REKLNQRFY 235
           REKLNQRFY
Sbjct: 181 REKLNQRFY 189


>Glyma07g06090.1 
          Length = 626

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 3   MFYLTSAYYVFGFNSQCGPGSSFKCSKSIWASEAASCLNQYESRSFLAKLAGFQTVVFVP 62
           MF+L S Y+ F      GPG  F   K +W S+       Y  RSFLAK AG QTVV VP
Sbjct: 156 MFFLASMYFSFP-RGLGGPGKCFASGKHLWVSDVLKSSFDYCVRSFLAKSAGIQTVVLVP 214

Query: 63  FKGGGVELGSKEMMPEEQGVLDMVRATFGESSSA 96
              G VE+GS  M+ E   +L  V++ F   +S+
Sbjct: 215 TDFGVVEMGSVRMVGESFELLQAVKSVFSAQASS 248



 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 22/22 (100%), Positives = 22/22 (100%)

Query: 214 EEPLNHVEAERQRREKLNQRFY 235
           EEPLNHVEAERQRREKLNQRFY
Sbjct: 456 EEPLNHVEAERQRREKLNQRFY 477


>Glyma08g01810.1 
          Length = 630

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 4   FYLTSAYYVFGFNSQCGPGSSFKCSKSIWASEAASCLNQYESRSFLAKLAGFQTVVFVPF 63
           +YL    ++F    Q  PG +    + IW + A S   +  SRS LAK A  +TVV  PF
Sbjct: 105 YYLVCMSFIFNI-GQGLPGRTLAKGQPIWLNNAHSSDCKIFSRSLLAKSASIETVVCFPF 163

Query: 64  KGGGVELGSKEMMPEEQGVLDMVRATFGESSSA 96
           + G +ELG+ E +PE+  V+++++ +F  S  A
Sbjct: 164 REGVIELGTTEQVPEDLSVIELIKTSFLNSLHA 196


>Glyma16g02690.1 
          Length = 618

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 52/102 (50%), Gaps = 6/102 (5%)

Query: 3   MFYLTSAYYVFGFNSQCGPGSSFKCSKSIWASEAASCLNQYESRSFLAKLAGFQTVVFVP 62
           MF+L S Y+ F      GPG  F   K +W S+       Y  RSFLAK AG QTVV VP
Sbjct: 149 MFFLVSMYFSFP-RGLGGPGKCFASGKHLWISDMFKSGFDYCVRSFLAKSAGIQTVVLVP 207

Query: 63  FKGGGVELGSKEMMPEEQGVLDMVRATFGESSSAQGKVLPKI 104
              G VE+GS   + E   +L  V++ F     +   VLPK+
Sbjct: 208 TDLGVVEMGSVRTVDESFELLQAVKSVF-----SAPLVLPKV 244



 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 22/22 (100%), Positives = 22/22 (100%)

Query: 214 EEPLNHVEAERQRREKLNQRFY 235
           EEPLNHVEAERQRREKLNQRFY
Sbjct: 447 EEPLNHVEAERQRREKLNQRFY 468


>Glyma03g01180.1 
          Length = 624

 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 1   MHMFYLTSAYYVFGFNSQCGPGSSFKCSKSIWASEAASCLNQYESRSFLAKLAGFQTVVF 60
           +  +YL    +VF  N Q  PG + +   ++W   A    ++  SRS LAK A  QTVV 
Sbjct: 114 LEWYYLVCMSFVFNHN-QSLPGRALEIGDTVWLCNAQHADSKVFSRSLLAKSATIQTVVC 172

Query: 61  VPFKGGGVELGSKEMMPEEQGVLDMVRATFGESS 94
            P++ G +E+G+ E++ E+  ++  V+A F E S
Sbjct: 173 FPYQKGVIEIGTTELVAEDPSLIQHVKACFLEIS 206


>Glyma19g44570.1 
          Length = 580

 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 51/98 (52%), Gaps = 6/98 (6%)

Query: 2   HMFYLTSAYYVFGFNSQCGPGSSFKCSKSIWASEAASCLNQYESRSFLAKLAGFQTVVFV 61
            MF+L S Y+ F      GPG  F   K +W       ++ Y  RS LA  AG QT+V V
Sbjct: 152 EMFFLASMYFSFP-RGHGGPGKCFASGKHLWLK----SVSDYCVRSSLASSAGIQTIVLV 206

Query: 62  PFKGGGVELGSKEMMPEEQGVLDMVRATFG-ESSSAQG 98
           P   G VELGS  M+PE   +L  V++ F  +S S QG
Sbjct: 207 PTDMGVVELGSVRMLPESFELLQAVKSVFSTQSPSYQG 244


>Glyma08g36720.1 
          Length = 582

 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 102/256 (39%), Gaps = 36/256 (14%)

Query: 4   FYLTSAYYVFGFNSQCGPGSSFKCSKSIWASEAASCLNQYESRSFLAKLAGFQTVVFVPF 63
           F+L S    F  N    PG +F  S  +W +           R+   +L G QT+V +P 
Sbjct: 168 FFLVSMTQSF-VNGSGLPGQAFFNSSPVWVAGPERLSESACERARQGQLFGLQTLVCIPS 226

Query: 64  KGGGVELGSKEMMPEEQGVLDMVRATFGESSSAQGKVLPKIFGHELSLGDTKSQS----I 119
             G VEL S E++ +   +++ VR      ++      P+     L+   T  Q      
Sbjct: 227 ANGVVELASAEVIFQNPDLMNKVR-DLFNFNNNNNNNNPETCSWALNCVATTDQGENDPS 285

Query: 120 TISFSPKVED-------DSGFTSDSYEVQALGVNHAYGNSSNGCIGDGEAKMFPQLNQMI 172
           ++  +P+++D       +S    +  E+   G        S   I DG          M+
Sbjct: 286 SLWLNPEIKDSSTVSPPNSTLWGEQEELLQWGFLSRSPVVSRSSIDDG----------ML 335

Query: 173 PGNFNPQARVSSLD---LGNEDASSPHLD----------DXXXXXXXXXXXXXXEEPLNH 219
                P A + S++   +G  D+    L+          +              EEPLNH
Sbjct: 336 SFTSLPAANIKSVNGACVGAGDSDHSDLEASVAKQVVEPEKRPRKRGRKPANGREEPLNH 395

Query: 220 VEAERQRREKLNQRFY 235
           VEAERQRREKLNQRFY
Sbjct: 396 VEAERQRREKLNQRFY 411


>Glyma03g41900.1 
          Length = 382

 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 3   MFYLTSAYYVFGFNSQCGPGSSFKCSKSIWASEAASCLNQYESRSFLAKLAGFQTVVFVP 62
           MF+L S Y+ F       PG  F      W    +  ++ +  RS LA  AG QT+V VP
Sbjct: 165 MFFLASMYFSFP-RGHGAPGKCFASGNHFWLKSVS--VSDHCVRSSLANSAGIQTIVLVP 221

Query: 63  FKGGGVELGSKEMMPEEQGVLDMVRATF 90
              G VELGS  M+PE   +L  V++ F
Sbjct: 222 TDLGVVELGSVRMLPESFELLQAVKSVF 249


>Glyma07g07740.1 
          Length = 650

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 6/94 (6%)

Query: 1   MHMFYLTSAYYVFGFNSQCGPGSSFKCSKSIWASEAASCLNQYESRSFLAKLAGFQTVVF 60
           +  +YL    +VF  N Q  PG + +   ++W   A    ++  SRS LAK     TVV 
Sbjct: 113 LEWYYLVCMSFVFNHN-QSLPGRALEIGDTVWLCNAQHADSKIFSRSLLAK-----TVVC 166

Query: 61  VPFKGGGVELGSKEMMPEEQGVLDMVRATFGESS 94
            P++ G +E+G+ E++ E+  ++  V+A F E S
Sbjct: 167 FPYQKGVIEIGTTELVTEDPSLIQHVKACFLEIS 200


>Glyma05g37770.1 
          Length = 626

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 6/87 (6%)

Query: 4   FYLTSAYYVFGFNSQCGPGSSFKCSKSIWASEAASCLNQYESRSFLAKLAGFQTVVFVPF 63
           +YL    ++F    Q  PG +    +SIW + A S   +  SRS LAK     TVV  PF
Sbjct: 104 YYLVCMSFIFNI-GQGLPGRTLAKGQSIWLNNAHSADCKIFSRSLLAK-----TVVCFPF 157

Query: 64  KGGGVELGSKEMMPEEQGVLDMVRATF 90
           + G +ELG+ E + E+  V++ ++ +F
Sbjct: 158 REGVIELGTTEQVSEDLSVIERIKTSF 184


>Glyma01g12740.1 
          Length = 637

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/22 (100%), Positives = 22/22 (100%)

Query: 214 EEPLNHVEAERQRREKLNQRFY 235
           EEPLNHVEAERQRREKLNQRFY
Sbjct: 447 EEPLNHVEAERQRREKLNQRFY 468


>Glyma09g33730.1 
          Length = 604

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/22 (100%), Positives = 22/22 (100%)

Query: 214 EEPLNHVEAERQRREKLNQRFY 235
           EEPLNHVEAERQRREKLNQRFY
Sbjct: 418 EEPLNHVEAERQRREKLNQRFY 439


>Glyma01g02250.1 
          Length = 368

 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 22/22 (100%), Positives = 22/22 (100%)

Query: 214 EEPLNHVEAERQRREKLNQRFY 235
           EEPLNHVEAERQRREKLNQRFY
Sbjct: 181 EEPLNHVEAERQRREKLNQRFY 202