Miyakogusa Predicted Gene

Lj1g3v4432100.1
Show Alignment: 
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4432100.1 tr|Q2LMD6|Q2LMD6_MALDO MYBR5 OS=Malus domestica
PE=2 SV=1,70.13,3e-19,SWI/SNF COMPLEX-RELATED,NULL,CUFF.32339.1
         (68 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g29740.1                                                       116   6e-27
Glyma20g30250.1                                                       102   1e-22
Glyma10g37520.1                                                       100   5e-22
Glyma09g24400.1                                                        99   1e-21
Glyma16g03640.1                                                        90   6e-19
Glyma07g07200.1                                                        88   2e-18
Glyma18g47230.1                                                        70   5e-13
Glyma13g19910.3                                                        65   1e-11
Glyma13g19910.1                                                        65   1e-11
Glyma13g19910.2                                                        65   1e-11
Glyma19g36170.1                                                        64   4e-11
Glyma10g05560.1                                                        64   5e-11
Glyma10g05560.3                                                        64   5e-11
Glyma10g05560.2                                                        63   6e-11
Glyma03g33440.1                                                        59   1e-09
Glyma09g29800.2                                                        59   2e-09
Glyma09g29800.1                                                        59   2e-09
Glyma11g33180.1                                                        57   5e-09
Glyma18g05050.1                                                        57   5e-09
Glyma02g40800.1                                                        57   6e-09
Glyma16g34340.1                                                        56   7e-09
Glyma14g39130.1                                                        56   7e-09
Glyma16g01980.4                                                        56   7e-09
Glyma16g01980.3                                                        56   7e-09
Glyma16g01980.2                                                        56   7e-09
Glyma16g01980.1                                                        56   7e-09
Glyma07g05410.3                                                        56   8e-09
Glyma07g05410.1                                                        56   8e-09
Glyma03g42260.4                                                        56   1e-08
Glyma03g42260.3                                                        56   1e-08
Glyma03g42260.2                                                        56   1e-08
Glyma03g42260.1                                                        56   1e-08
Glyma19g45030.1                                                        55   1e-08
Glyma20g08230.1                                                        52   2e-07

>Glyma16g29740.1 
          Length = 301

 Score =  116 bits (290), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 60/74 (81%), Positives = 63/74 (85%), Gaps = 6/74 (8%)

Query: 1  MVSKNPNPPEGFCLDPST-MALPGLSPFASVSSAA-----EDAAKKIRKPYTITKSRENW 54
          MVSKNPNPPEGF LDPS  M LPG+ PFASVS+A      EDAAKKIRKPYTITKSRENW
Sbjct: 1  MVSKNPNPPEGFYLDPSGGMPLPGMPPFASVSAATAANSPEDAAKKIRKPYTITKSRENW 60

Query: 55 TEPEHDKFLEALQL 68
          TEPEHDKFLEA+QL
Sbjct: 61 TEPEHDKFLEAIQL 74


>Glyma20g30250.1 
          Length = 306

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 59/72 (81%), Gaps = 4/72 (5%)

Query: 1  MVSKNPNPPEGFCLDPSTMALPGLSPFASVSSAA----EDAAKKIRKPYTITKSRENWTE 56
          MVSKNPNP E F LDPS M+LPG+ PFA+ ++A     ED AKK RKPYTITKSRE+WTE
Sbjct: 1  MVSKNPNPSEAFYLDPSGMSLPGILPFAAAATATADSFEDPAKKTRKPYTITKSRESWTE 60

Query: 57 PEHDKFLEALQL 68
          PEHDKFLEALQL
Sbjct: 61 PEHDKFLEALQL 72


>Glyma10g37520.1 
          Length = 354

 Score =  100 bits (248), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/71 (71%), Positives = 58/71 (81%), Gaps = 3/71 (4%)

Query: 1  MVSKNPNPPEGFCLDPSTMALPGLSPFASVSS---AAEDAAKKIRKPYTITKSRENWTEP 57
          MVSKNPNP E   LDPS M+LPG+ PFA+ ++   + ED AKK RKPYTITKSRE+WTEP
Sbjct: 1  MVSKNPNPSEALNLDPSGMSLPGILPFAAAAAAAVSFEDPAKKTRKPYTITKSRESWTEP 60

Query: 58 EHDKFLEALQL 68
          EHDKFLEALQL
Sbjct: 61 EHDKFLEALQL 71


>Glyma09g24400.1 
          Length = 302

 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/75 (78%), Positives = 61/75 (81%), Gaps = 7/75 (9%)

Query: 1  MVSKNPNPPEGFCLDPST-MALPGLSPFASVSSAAEDAA------KKIRKPYTITKSREN 53
          MVSKNPNPPEGF LDPS  MALPG  PFASVS+AA  A       KKIRKPYTITKSREN
Sbjct: 1  MVSKNPNPPEGFYLDPSGGMALPGKPPFASVSAAAAAANSSEDAAKKIRKPYTITKSREN 60

Query: 54 WTEPEHDKFLEALQL 68
          WTEPEHDKFLEA+QL
Sbjct: 61 WTEPEHDKFLEAIQL 75


>Glyma16g03640.1 
          Length = 332

 Score = 89.7 bits (221), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 52/76 (68%), Gaps = 8/76 (10%)

Query: 1  MVSKNPNPPEGFCL-DPSTMALPGLSPFASVS-------SAAEDAAKKIRKPYTITKSRE 52
          MVS NPNP +GF   DPS M LPG++             SA ED  KKIRKPYTITKSRE
Sbjct: 1  MVSVNPNPAQGFYFFDPSNMTLPGVNNLPPPPPPAPAAPSAVEDPNKKIRKPYTITKSRE 60

Query: 53 NWTEPEHDKFLEALQL 68
          +WTE EHDKFLEALQL
Sbjct: 61 SWTEQEHDKFLEALQL 76


>Glyma07g07200.1 
          Length = 331

 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/76 (61%), Positives = 54/76 (71%), Gaps = 8/76 (10%)

Query: 1  MVSKNPNPPEGFCL-DPSTMALPGLSPFASVS-------SAAEDAAKKIRKPYTITKSRE 52
          MVS NP+P +GF   DPS MALPG++             +A ED +KKIRKPYTITKSRE
Sbjct: 1  MVSVNPSPAQGFYFFDPSNMALPGVNNLPPPPLPAPPSHAAVEDPSKKIRKPYTITKSRE 60

Query: 53 NWTEPEHDKFLEALQL 68
          +WTE EHDKFLEALQL
Sbjct: 61 SWTEQEHDKFLEALQL 76


>Glyma18g47230.1 
          Length = 307

 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 40/65 (61%), Gaps = 16/65 (24%)

Query: 5  NPNPPEGF-CLDPSTMALPGLSPFASVSSAAEDAAKKIRKPYTITKSRENWTEPEHDKFL 63
          NPNPP+ F   DP  M               ED  KK+RKPYTITKSRENWT+ EHDKFL
Sbjct: 7  NPNPPQTFHFFDPFNM---------------EDQNKKVRKPYTITKSRENWTDQEHDKFL 51

Query: 64 EALQL 68
          EAL L
Sbjct: 52 EALHL 56


>Glyma13g19910.3 
          Length = 294

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 28/38 (73%), Positives = 35/38 (92%)

Query: 31 SSAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          ++A++ + KK+RKPYTITKSRE+WTE EHDKFLEALQL
Sbjct: 15 AAASDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQL 52


>Glyma13g19910.1 
          Length = 295

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 28/38 (73%), Positives = 35/38 (92%)

Query: 31 SSAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          ++A++ + KK+RKPYTITKSRE+WTE EHDKFLEALQL
Sbjct: 15 AAASDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQL 52


>Glyma13g19910.2 
          Length = 265

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 28/38 (73%), Positives = 35/38 (92%)

Query: 31 SSAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          ++A++ + KK+RKPYTITKSRE+WTE EHDKFLEALQL
Sbjct: 15 AAASDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQL 52


>Glyma19g36170.1 
          Length = 277

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/38 (73%), Positives = 33/38 (86%)

Query: 31 SSAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          S++   + KKIRKPYTITKSRE+W+E EHDKFLEALQL
Sbjct: 6  STSTSGSGKKIRKPYTITKSRESWSEEEHDKFLEALQL 43


>Glyma10g05560.1 
          Length = 294

 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 27/35 (77%), Positives = 32/35 (91%)

Query: 34 AEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          ++ + KK+RKPYTITKSRE+WTE EHDKFLEALQL
Sbjct: 19 SDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQL 53


>Glyma10g05560.3 
          Length = 293

 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 27/35 (77%), Positives = 32/35 (91%)

Query: 34 AEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          ++ + KK+RKPYTITKSRE+WTE EHDKFLEALQL
Sbjct: 19 SDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQL 53


>Glyma10g05560.2 
          Length = 266

 Score = 63.2 bits (152), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 27/35 (77%), Positives = 32/35 (91%)

Query: 34 AEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          ++ + KK+RKPYTITKSRE+WTE EHDKFLEALQL
Sbjct: 19 SDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQL 53


>Glyma03g33440.1 
          Length = 244

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/29 (86%), Positives = 28/29 (96%)

Query: 40 KIRKPYTITKSRENWTEPEHDKFLEALQL 68
          K+RKPYTITKSRE+W+E EHDKFLEALQL
Sbjct: 1  KVRKPYTITKSRESWSEEEHDKFLEALQL 29


>Glyma09g29800.2 
          Length = 466

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/35 (74%), Positives = 29/35 (82%)

Query: 34 AEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          AE+ A K+RKPYTITK RE WTE EH KFLEAL+L
Sbjct: 29 AENVAPKVRKPYTITKQREKWTEEEHQKFLEALKL 63


>Glyma09g29800.1 
          Length = 466

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/35 (74%), Positives = 29/35 (82%)

Query: 34 AEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          AE+ A K+RKPYTITK RE WTE EH KFLEAL+L
Sbjct: 29 AENVAPKVRKPYTITKQREKWTEEEHQKFLEALKL 63


>Glyma11g33180.1 
          Length = 287

 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 35/61 (57%)

Query: 8  PPEGFCLDPSTMALPGLSPFASVSSAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQ 67
          PPEG  +  S+             S   D A K+RKPYTITK RE WT+ EH KFLEAL+
Sbjct: 16 PPEGGGVSLSSGHSVTHIQLNDQFSCGNDYALKVRKPYTITKQRERWTDEEHKKFLEALK 75

Query: 68 L 68
          L
Sbjct: 76 L 76


>Glyma18g05050.1 
          Length = 361

 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 28/37 (75%)

Query: 32 SAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          S   D A K+RKPYTITK RE WT+ EH KFLEAL+L
Sbjct: 41 SCGNDYALKVRKPYTITKQRERWTDEEHKKFLEALKL 77


>Glyma02g40800.1 
          Length = 436

 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 33/51 (64%), Gaps = 5/51 (9%)

Query: 23 GLSPFASVS-----SAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          G+ P A +      S   D A K+RKPYTITK RE WT+ EH KFLEAL+L
Sbjct: 27 GVHPVADIPLHDQFSCGNDYALKVRKPYTITKQRERWTDEEHKKFLEALKL 77


>Glyma16g34340.1 
          Length = 477

 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 29/42 (69%)

Query: 27 FASVSSAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
           A + S   +   K+RKPYTITK RE WTE EH KFLEAL+L
Sbjct: 32 VAHIPSVGNNQTPKVRKPYTITKQREKWTEEEHQKFLEALKL 73


>Glyma14g39130.1 
          Length = 436

 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 29/43 (67%)

Query: 26 PFASVSSAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          P     S   D A K+RKPYTITK RE WT+ EH KFLEAL+L
Sbjct: 35 PLHDQLSCGNDYALKVRKPYTITKQRERWTDEEHKKFLEALKL 77


>Glyma16g01980.4 
          Length = 750

 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query: 32 SAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          S+ E+   K RKPYTITK RE WTE EH++FLEAL+L
Sbjct: 5  SSGEEVVVKTRKPYTITKQRERWTEEEHNRFLEALKL 41


>Glyma16g01980.3 
          Length = 750

 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query: 32 SAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          S+ E+   K RKPYTITK RE WTE EH++FLEAL+L
Sbjct: 5  SSGEEVVVKTRKPYTITKQRERWTEEEHNRFLEALKL 41


>Glyma16g01980.2 
          Length = 750

 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query: 32 SAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          S+ E+   K RKPYTITK RE WTE EH++FLEAL+L
Sbjct: 5  SSGEEVVVKTRKPYTITKQRERWTEEEHNRFLEALKL 41


>Glyma16g01980.1 
          Length = 750

 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query: 32 SAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          S+ E+   K RKPYTITK RE WTE EH++FLEAL+L
Sbjct: 5  SSGEEVVVKTRKPYTITKQRERWTEEEHNRFLEALKL 41


>Glyma07g05410.3 
          Length = 770

 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query: 32 SAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          S+ E+   K RKPYTITK RE WTE EH++FLEAL+L
Sbjct: 5  SSGEEVVVKTRKPYTITKQRERWTEEEHNRFLEALKL 41


>Glyma07g05410.1 
          Length = 770

 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query: 32 SAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          S+ E+   K RKPYTITK RE WTE EH++FLEAL+L
Sbjct: 5  SSGEEVVVKTRKPYTITKQRERWTEEEHNRFLEALKL 41


>Glyma03g42260.4 
          Length = 748

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query: 32 SAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          S+ E+   K RKPYTITK RE WTE EH++FLEAL+L
Sbjct: 5  SSGEEVVIKTRKPYTITKQRERWTEEEHNRFLEALKL 41


>Glyma03g42260.3 
          Length = 748

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query: 32 SAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          S+ E+   K RKPYTITK RE WTE EH++FLEAL+L
Sbjct: 5  SSGEEVVIKTRKPYTITKQRERWTEEEHNRFLEALKL 41


>Glyma03g42260.2 
          Length = 748

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query: 32 SAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          S+ E+   K RKPYTITK RE WTE EH++FLEAL+L
Sbjct: 5  SSGEEVVIKTRKPYTITKQRERWTEEEHNRFLEALKL 41


>Glyma03g42260.1 
          Length = 748

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query: 32 SAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          S+ E+   K RKPYTITK RE WTE EH++FLEAL+L
Sbjct: 5  SSGEEVVIKTRKPYTITKQRERWTEEEHNRFLEALKL 41


>Glyma19g45030.1 
          Length = 749

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query: 32 SAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
          S+ E+   K RKPYTITK RE WTE EH++FLEAL+L
Sbjct: 5  SSGEEVLIKTRKPYTITKQRERWTEEEHNRFLEALKL 41


>Glyma20g08230.1 
          Length = 258

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/28 (75%), Positives = 23/28 (82%)

Query: 41  IRKPYTITKSRENWTEPEHDKFLEALQL 68
           +RKPYTITK RE WT  EH KFLEAL+L
Sbjct: 201 VRKPYTITKQRERWTNEEHKKFLEALKL 228