Miyakogusa Predicted Gene

Lj1g3v4407610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4407610.1 tr|B7FL19|B7FL19_MEDTR Exosome complex
exonuclease RRP4 OS=Medicago truncatula GN=MTR_4g121550 PE=2
,86.54,0,coiled-coil,NULL; RRP4,NULL; PNAS-3 RELATED,Exosome complex
RNA-binding protein 1/RRP40/RRP4; seg,NU,CUFF.32320.1
         (327 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g33520.1                                                       544   e-155
Glyma03g30620.1                                                       271   1e-72
Glyma17g22080.1                                                       142   4e-34

>Glyma19g33520.1 
          Length = 351

 Score =  544 bits (1402), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 264/313 (84%), Positives = 282/313 (90%)

Query: 1   MRGIQLTLSQTQKIRLQKALEQLESLSSKVNSDASVTIADSIPVNHEDGVLKGHGTGDLN 60
           MR IQL LSQTQK+RLQKALEQLESLS+KVNSDASV IADSI VNHEDGVLKGHGT DLN
Sbjct: 25  MREIQLPLSQTQKVRLQKALEQLESLSTKVNSDASVIIADSIHVNHEDGVLKGHGTADLN 84

Query: 61  GEVVATVCGVVERVNKLVYVRSLRSRYKPEVGDIIIGRVIEVAQKRWRLEINYSQDAFLM 120
           GEVVAT+CGVVERVNKLVYVR+LRSRYKPEVGDI+IGRV+EVAQKRWRLEINY+QDA L+
Sbjct: 85  GEVVATLCGVVERVNKLVYVRALRSRYKPEVGDIVIGRVVEVAQKRWRLEINYNQDAVLL 144

Query: 121 LSSMNMPDGVQRRRTSVDELNMRCIFEEKDVVCAEVRGFQHDGLHLQARSKKYGKLNSGQ 180
           LSSMNMPDGVQRRRT+VDELNMRCIFEE DVVCAEVRGFQHDGLHLQARS+KYGKLN GQ
Sbjct: 145 LSSMNMPDGVQRRRTAVDELNMRCIFEENDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQ 204

Query: 181 LLTVPPYLVKRQKLHFHHLEQYGVDLILGCNGFIWVGEHVEARDEMVEDQVNQSDPQVPS 240
           LLTVPPYLVKRQK HFHHLE++G+DLILGCNGFIWVGEHVEA+D+M+EDQV+QSD QV  
Sbjct: 205 LLTVPPYLVKRQKQHFHHLEEFGIDLILGCNGFIWVGEHVEAKDDMIEDQVSQSDSQVLF 264

Query: 241 PNKNSRDLEEQEKNYTALETRKYICRAANAVRVLSTLGFVITVEIIKGXXXXXXXXXXXX 300
           PNKN   LEEQEKNYT LETRKYI RAANAVRVLSTLGF IT+EIIKG            
Sbjct: 265 PNKNCVSLEEQEKNYTILETRKYISRAANAVRVLSTLGFNITLEIIKGIIDLSLSMNLDI 324

Query: 301 HDMLGSEFGVLVA 313
           HDMLGSEF VLVA
Sbjct: 325 HDMLGSEFCVLVA 337


>Glyma03g30620.1 
          Length = 181

 Score =  271 bits (692), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 133/182 (73%), Positives = 142/182 (78%), Gaps = 15/182 (8%)

Query: 132 RRRTSVDELNMRCIFEEKDVVCAEVRGFQHDGLHLQARSKKYGKLNSGQLLTVPPYLVKR 191
           RRRT+ DELNMRCIFEE DVVCAEV GFQHDGLHLQARS+KYGKLN GQLL VPPYLVKR
Sbjct: 1   RRRTAADELNMRCIFEENDVVCAEVCGFQHDGLHLQARSRKYGKLNRGQLLIVPPYLVKR 60

Query: 192 QKLHFHHLEQYGVDLILGCNGFIWVGEHVEARDEMVEDQVNQSDPQVPSPNKNSRDLEEQ 251
           QK HFHHLE++G+DLILGCNGFIWVGEHVEA+D+MVEDQV+QSDPQV  PN         
Sbjct: 61  QKQHFHHLEEFGIDLILGCNGFIWVGEHVEAKDDMVEDQVSQSDPQVLLPNNI------- 113

Query: 252 EKNYTALETRKYICRAANAVRVLSTLGFVITVEIIKGXXXXXXXXXXXXHDMLGSEFGVL 311
                   TR YICRAANAVRVLSTLGF IT+EIIKG            HDMLGSEF VL
Sbjct: 114 --------TRNYICRAANAVRVLSTLGFNITLEIIKGIIDLSLSMNLEMHDMLGSEFCVL 165

Query: 312 VA 313
           VA
Sbjct: 166 VA 167


>Glyma17g22080.1 
          Length = 81

 Score =  142 bits (359), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/81 (82%), Positives = 75/81 (92%)

Query: 49  GVLKGHGTGDLNGEVVATVCGVVERVNKLVYVRSLRSRYKPEVGDIIIGRVIEVAQKRWR 108
           GVLKGH T DLNGEVVAT+CGVVE +NKLVYVR+LRS+YKPEVGDI+IGRV+EVAQK WR
Sbjct: 1   GVLKGHETADLNGEVVATLCGVVEHINKLVYVRALRSKYKPEVGDIVIGRVVEVAQKCWR 60

Query: 109 LEINYSQDAFLMLSSMNMPDG 129
           LEINY+QDA L+LSSMNM DG
Sbjct: 61  LEINYNQDAVLLLSSMNMRDG 81