Miyakogusa Predicted Gene

Lj1g3v4372230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4372230.1 tr|B9HLW3|B9HLW3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_565231 PE=4
SV=1,50,0.00004,seg,NULL; ZINC_FINGER_C2H2_1,Zinc finger, C2H2;
ZINC_FINGER_C2H2_2,Zinc finger, C2H2,gene.g36400.t1.1
         (214 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g27720.1                                                        52   7e-07
Glyma08g20880.1                                                        51   9e-07
Glyma07g01470.1                                                        50   1e-06
Glyma08g20870.1                                                        50   2e-06
Glyma02g03380.1                                                        50   2e-06
Glyma02g22270.1                                                        49   3e-06

>Glyma03g27720.1 
          Length = 112

 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 24/27 (88%)

Query: 40 YGCLYCSKRFSSVQAVGGHQNAHRTER 66
          + C++CSK+FSS QA+GGHQNAH+ ER
Sbjct: 21 FSCMFCSKKFSSPQALGGHQNAHKKER 47


>Glyma08g20880.1 
          Length = 92

 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 29/36 (80%)

Query: 42 CLYCSKRFSSVQAVGGHQNAHRTERVESEMRQLIMM 77
          C YC+K+F++ QA+GGHQNAH+ ER  ++ ++++ M
Sbjct: 34 CKYCNKKFNNYQALGGHQNAHKNERAAAQKQKILSM 69


>Glyma07g01470.1 
          Length = 211

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 28/36 (77%)

Query: 42 CLYCSKRFSSVQAVGGHQNAHRTERVESEMRQLIMM 77
          C YC+K+FS+ QA+GGHQNAH+ ER  ++  +++ M
Sbjct: 33 CKYCNKKFSNYQALGGHQNAHKEERAAAQKEKILNM 68


>Glyma08g20870.1 
          Length = 179

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 29/39 (74%), Gaps = 1/39 (2%)

Query: 40 YGCLYCSKRFSSVQAVGGHQNAHRTERVESEMRQLIMMN 78
          + C YC+K+FSS QA+GGH NAH+ ER E+E +  I+ N
Sbjct: 5  FSCKYCNKKFSSYQALGGHHNAHKAER-EAEKQNKILSN 42


>Glyma02g03380.1 
          Length = 246

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 31  SLSQPGSHGYGCLYCSKRFSSVQAVGGHQNAHRTERVESEMRQLIMMN 78
           S + P    + C YC K F++ QA+GGHQNAH+ ER++ +  QL  +N
Sbjct: 69  SANDPDERKFECQYCYKEFANSQALGGHQNAHKKERMKKKRLQLQSIN 116


>Glyma02g22270.1 
          Length = 148

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 25/32 (78%)

Query: 40 YGCLYCSKRFSSVQAVGGHQNAHRTERVESEM 71
          + C +C K+FSS QA+GGHQNAH+ ERV S M
Sbjct: 3  FSCKFCDKKFSSSQALGGHQNAHKRERVISRM 34