Miyakogusa Predicted Gene

Lj1g3v4327750.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4327750.1 tr|B9II94|B9II94_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_576373 PE=4
SV=1,56.92,0.00000000000006, ,gene.g36371.t1.1
         (127 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g33040.1                                                       157   2e-39
Glyma03g30150.1                                                       147   3e-36

>Glyma19g33040.1 
          Length = 553

 Score =  157 bits (398), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 71/101 (70%), Positives = 81/101 (80%)

Query: 1   MSLEQWFYFCDDCDFAAHTHCVVGKCWRVKFGGTFKYDTHSHPLALVEETRKNTACEACD 60
           MS +QWFY+CDDCD  AH  CVVGK  RVKFGG+FKYD HSHPLALVEET +N  C AC 
Sbjct: 396 MSPKQWFYYCDDCDSGAHPSCVVGKSRRVKFGGSFKYDVHSHPLALVEETEQNNECGACG 455

Query: 61  EQCNGLALECGQCKSYYHREGKCFWEQFKESAKYFAFSGTM 101
           E+CNG  LECGQCK Y+HREG+CFW++FK+SAKY   SG M
Sbjct: 456 ERCNGWTLECGQCKGYFHREGQCFWKEFKKSAKYLELSGMM 496


>Glyma03g30150.1 
          Length = 415

 Score =  147 bits (371), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 69/105 (65%), Positives = 82/105 (78%), Gaps = 1/105 (0%)

Query: 1   MSLEQWFYFCDDCDFAAHTHCVVGKCWRVKFGGTFKYDTHSHPLALVEETRKNTACEACD 60
           MS +QWFY CDDCD  AH +CV GK  R+KFGG+F+YD HSHPLALVEET +   C AC 
Sbjct: 312 MSKKQWFYCCDDCDSGAHPYCVAGKFRRMKFGGSFQYDVHSHPLALVEETEQKNECGACG 371

Query: 61  EQCNGLALECGQCKSYYHREGKCFWEQFKESAKYFAFSGTMLRYR 105
           E CNG  LECGQCK Y+HREG+CFW++FK+SAKY   SG M+R+R
Sbjct: 372 EHCNGWTLECGQCKRYFHREGQCFWKEFKKSAKYLELSG-MMRHR 415