Miyakogusa Predicted Gene

Lj1g3v4317680.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4317680.2 tr|G7KVD6|G7KVD6_MEDTR DNA polymerase delta small
subunit OS=Medicago truncatula GN=MTR_7g093210
PE=,86.54,0,DNA_pol_E_B,DNA polymerase alpha/epsilon, subunit B; DNA
POLYMERASE DELTA SUBUNIT 2,NULL; DNA POLYME,CUFF.32264.2
         (435 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g30080.1                                                       769   0.0  
Glyma19g32950.1                                                       765   0.0  
Glyma13g09350.1                                                       113   4e-25
Glyma06g36570.1                                                       105   9e-23
Glyma08g31210.1                                                       103   3e-22
Glyma10g09450.1                                                        85   2e-16
Glyma18g12220.1                                                        71   2e-12

>Glyma03g30080.1 
          Length = 433

 Score =  769 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/435 (87%), Positives = 408/435 (93%), Gaps = 2/435 (0%)

Query: 1   MVMDRVQCSYEPLDEPFEIGKEMYRGQQYSQIYFARLHLMRTLLHSLVPHLKPNLPVCTV 60
           M M+RVQC+Y  LDE FEIGKE Y+GQQYSQIYFARLHLMRTLL+SLVPH KPN PVCTV
Sbjct: 1   MGMERVQCAYASLDEAFEIGKEAYQGQQYSQIYFARLHLMRTLLYSLVPHWKPNFPVCTV 60

Query: 61  LGLEEQAGKECVIVGTLYKHMKLKPCILDEYSKERSAVPLVKPHNFMHPDDHLILEDESG 120
           LGLEE  GKECVIVGTLYKHMKLKPCILDEYSKERS VPLVKPHNF+HPDDHL+LEDESG
Sbjct: 61  LGLEE--GKECVIVGTLYKHMKLKPCILDEYSKERSVVPLVKPHNFIHPDDHLVLEDESG 118

Query: 121 RVKLGGDLISPSVYVTGIVVAVHGKETEAGEFLVQDVLEAGLPPQIEFPLKSREDKYVVF 180
           RVKL G +I PS YVTGIVVA+ GKET AG+FLVQDVL+AGLPPQIEFPLK REDKYVV 
Sbjct: 119 RVKLSGSIILPSEYVTGIVVALLGKETGAGDFLVQDVLDAGLPPQIEFPLKPREDKYVVL 178

Query: 181 VSGLSIGSSNSNPLQFQLLIDHITGHLGDEKEKSIASQTVRVVIAGNSVEIPSGLFNGQN 240
           VSGLS+GSS+SNPLQFQLLIDHITGHLGDEKE+SIASQ VRVV AGN VEIP  L NGQN
Sbjct: 179 VSGLSVGSSSSNPLQFQLLIDHITGHLGDEKEQSIASQIVRVVFAGNLVEIPRRLLNGQN 238

Query: 241 MGSKDLSRISEPIKELDILLNQIAAGLPLDIMPGPSDPSNYSLPQQALHRCLFPGSSAYN 300
           + SKDLSR++EPIKELDILL+QIAAGLPLDIMPGPSDP+N+SLPQQ+LHRCLFPGSSAYN
Sbjct: 239 LASKDLSRMAEPIKELDILLSQIAAGLPLDIMPGPSDPANFSLPQQSLHRCLFPGSSAYN 298

Query: 301 TFTSCTNPHSFELDNIRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLG 360
           TF SCTNPH FE+DN+RFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLG
Sbjct: 299 TFRSCTNPHCFEVDNVRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLG 358

Query: 361 CYPYTDRDPFFIESCPHVYFIGNQDKYDTRVIKGSEGQLVRLICVPKFSETGVAVMLNLR 420
           CYPYTD+DPFFIESCPHVYF+GNQDK++TRVIKGSEGQLVRLICVPKFSETGVAVMLNLR
Sbjct: 359 CYPYTDKDPFFIESCPHVYFVGNQDKFETRVIKGSEGQLVRLICVPKFSETGVAVMLNLR 418

Query: 421 DLECHALSFGTQFSS 435
           DL+CHALSFGTQFSS
Sbjct: 419 DLDCHALSFGTQFSS 433


>Glyma19g32950.1 
          Length = 433

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/435 (86%), Positives = 408/435 (93%), Gaps = 2/435 (0%)

Query: 1   MVMDRVQCSYEPLDEPFEIGKEMYRGQQYSQIYFARLHLMRTLLHSLVPHLKPNLPVCTV 60
           M M+RVQC+Y  LDE FEIGKE Y+GQQYSQIYFARLHLMRTLL+SL+PH KPN PVCTV
Sbjct: 1   MGMERVQCAYASLDEAFEIGKETYQGQQYSQIYFARLHLMRTLLYSLIPHWKPNSPVCTV 60

Query: 61  LGLEEQAGKECVIVGTLYKHMKLKPCILDEYSKERSAVPLVKPHNFMHPDDHLILEDESG 120
           LGLEE  GKECVIVGTLYKHMKLKPCILDEYSKERS VPLVKPHNF+HPDDHL+LEDESG
Sbjct: 61  LGLEE--GKECVIVGTLYKHMKLKPCILDEYSKERSVVPLVKPHNFIHPDDHLVLEDESG 118

Query: 121 RVKLGGDLISPSVYVTGIVVAVHGKETEAGEFLVQDVLEAGLPPQIEFPLKSREDKYVVF 180
           RVKL G +ISPS YVTGIVVA+ GKET AG+FLVQDVL+AGLPPQIEFPLKSREDKYVV 
Sbjct: 119 RVKLSGYIISPSEYVTGIVVALLGKETGAGDFLVQDVLQAGLPPQIEFPLKSREDKYVVL 178

Query: 181 VSGLSIGSSNSNPLQFQLLIDHITGHLGDEKEKSIASQTVRVVIAGNSVEIPSGLFNGQN 240
           VSGLS+GSS+SNPLQFQLLIDHITGHLGDEKE+SIASQ  +VV AGN +EIP  L NGQN
Sbjct: 179 VSGLSVGSSSSNPLQFQLLIDHITGHLGDEKEQSIASQIAQVVFAGNLIEIPHRLLNGQN 238

Query: 241 MGSKDLSRISEPIKELDILLNQIAAGLPLDIMPGPSDPSNYSLPQQALHRCLFPGSSAYN 300
           + SKDLSR++EPIKELDILL+QIAAGLPLDIMPGPSDP+N+SLPQQ+LHRCLFPGSS YN
Sbjct: 239 LASKDLSRMAEPIKELDILLSQIAAGLPLDIMPGPSDPANFSLPQQSLHRCLFPGSSTYN 298

Query: 301 TFTSCTNPHSFELDNIRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLG 360
           TF SCTNPH FELDN+RFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLG
Sbjct: 299 TFRSCTNPHCFELDNVRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLG 358

Query: 361 CYPYTDRDPFFIESCPHVYFIGNQDKYDTRVIKGSEGQLVRLICVPKFSETGVAVMLNLR 420
           CYPYTD+DPFFIESCPHVYFIGNQDK++TRVIKGSEGQLVRL+CVPKFSETGVAVMLNLR
Sbjct: 359 CYPYTDKDPFFIESCPHVYFIGNQDKFETRVIKGSEGQLVRLVCVPKFSETGVAVMLNLR 418

Query: 421 DLECHALSFGTQFSS 435
           DL+C+ALSFGTQFSS
Sbjct: 419 DLDCYALSFGTQFSS 433


>Glyma13g09350.1 
          Length = 57

 Score =  113 bits (283), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/56 (89%), Positives = 52/56 (92%)

Query: 304 SCTNPHSFELDNIRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTL 359
           SCTNPH FELDN+RFLGT  QNVDDLEKYS+AKDKLEFMER LRWRHLAPTAPNTL
Sbjct: 1   SCTNPHCFELDNVRFLGTLVQNVDDLEKYSDAKDKLEFMERALRWRHLAPTAPNTL 56


>Glyma06g36570.1 
          Length = 57

 Score =  105 bits (262), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 47/56 (83%), Positives = 49/56 (87%)

Query: 304 SCTNPHSFELDNIRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTL 359
           SCTN H FELDN+RFL TS QNVDD EKYSEAKDKLEFME TLRWRH+APT PNTL
Sbjct: 1   SCTNLHCFELDNVRFLWTSIQNVDDFEKYSEAKDKLEFMEWTLRWRHVAPTVPNTL 56


>Glyma08g31210.1 
          Length = 58

 Score =  103 bits (258), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/56 (82%), Positives = 51/56 (91%)

Query: 304 SCTNPHSFELDNIRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTL 359
           SC N H FELDN++FL TS QNVDDLEKYSEAKDKL+FME+TLRWRH+APTAPNTL
Sbjct: 1   SCINLHCFELDNVKFLRTSIQNVDDLEKYSEAKDKLKFMEQTLRWRHVAPTAPNTL 56


>Glyma10g09450.1 
          Length = 50

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/53 (77%), Positives = 43/53 (81%), Gaps = 4/53 (7%)

Query: 307 NPHSFELDNIRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTL 359
           NPH+      RFL TS QNVDDLEKY EAKDKLEFMERTLRWRH+APT PNTL
Sbjct: 1   NPHT----GSRFLRTSIQNVDDLEKYLEAKDKLEFMERTLRWRHVAPTTPNTL 49


>Glyma18g12220.1 
          Length = 79

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/47 (72%), Positives = 38/47 (80%), Gaps = 1/47 (2%)

Query: 321 TSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLG-CYPYTD 366
           TS QNVDDLEKYS+AKDKLEFME+TLRWRH+APT    L  CY + D
Sbjct: 29  TSVQNVDDLEKYSKAKDKLEFMEQTLRWRHVAPTLKLMLFVCYLFKD 75