Miyakogusa Predicted Gene

Lj1g3v4237990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4237990.1 Non Chatacterized Hit- tr|B3RMG9|B3RMG9_TRIAD
Putative uncharacterized protein OS=Trichoplax
adhaere,31.25,0.00000000003,tRNA_int_end_N2,tRNA-splicing
endonuclease, subunit Sen54, N-terminal,CUFF.32116.1
         (212 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g15520.1                                                       313   1e-85
Glyma03g29030.1                                                       249   1e-66
Glyma19g31810.1                                                       158   4e-39

>Glyma07g15520.1 
          Length = 239

 Score =  313 bits (801), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 157/213 (73%), Positives = 171/213 (80%), Gaps = 28/213 (13%)

Query: 1   MGMAEVIEKSGKMWVTTGIVRGGKTYSSIEETLYLMELGALDLFDNSDRSISLIEMYEKV 60
           MGM EVIEK+GKMW+TTGIVR GK YSSIEETLYLMELGALD+ DN  RSISL EMYEKV
Sbjct: 54  MGMGEVIEKNGKMWITTGIVRSGKIYSSIEETLYLMELGALDIVDNDGRSISLTEMYEKV 113

Query: 61  AGGKSGCCWELFEVYRHLKSLGYIIRRHDVAWSLKSVRSSHNPIALEATEESSQLEEMGS 120
           A GKSGCCWELFEVYRHLKSLGYII RH VAWSL                          
Sbjct: 114 ASGKSGCCWELFEVYRHLKSLGYIIGRHGVAWSL-------------------------- 147

Query: 121 KVELCINKLFGELKISDVKPDFDIYLPNSRFRKSSPGDPNFLLYLSR-SNPPSRAEIEAL 179
           K+  C +KLFGEL+++D++PDFD+YLPNSRFRKSSPGDP+FLLYLSR  NPPSRAEIEAL
Sbjct: 148 KISTC-HKLFGELQVNDLRPDFDVYLPNSRFRKSSPGDPSFLLYLSRVQNPPSRAEIEAL 206

Query: 180 ERQCDGIPLKICLVTEGRVSFFSFDKVELPVLP 212
           E+QC GIPLKICLVTEGRVSFFSFDKVELPV+P
Sbjct: 207 EKQCGGIPLKICLVTEGRVSFFSFDKVELPVIP 239


>Glyma03g29030.1 
          Length = 170

 Score =  249 bits (637), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 121/170 (71%), Positives = 142/170 (83%), Gaps = 5/170 (2%)

Query: 3   MAEVIEKSGKMWVTTGIVRGGKTYSSIEETLYLMELGALDLFDNSDRSISLIEMYEKVAG 62
           M ++IEK+GKMWVTTGIVR GK YSSIEETLYLMELGALDL DN  RSISL E YEKVA 
Sbjct: 1   MGDIIEKNGKMWVTTGIVRSGKIYSSIEETLYLMELGALDLLDNGGRSISLTETYEKVAS 60

Query: 63  GKSGCCWELFEVYRHLKSLGYIIRRHDVAWSLKSVRSSHNPIALEATEESSQLEEMGSKV 122
           GKSGCCWELF+VYRHLKS+GYII RH VAWSLKS++   N + L++ +E  QLE++ SK 
Sbjct: 61  GKSGCCWELFDVYRHLKSIGYIIGRHGVAWSLKSIKVPINLLLLKSQKEIEQLEDIDSKS 120

Query: 123 ELCIN-----KLFGELKISDVKPDFDIYLPNSRFRKSSPGDPNFLLYLSR 167
           EL IN     KLFGE++++D++PDFD+YLPNSRFRKS PGDP+FLLYLSR
Sbjct: 121 ELSINELWLFKLFGEMQVNDLRPDFDVYLPNSRFRKSCPGDPSFLLYLSR 170


>Glyma19g31810.1 
          Length = 380

 Score =  158 bits (400), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 103/239 (43%), Positives = 120/239 (50%), Gaps = 89/239 (37%)

Query: 1   MGMAEVIEKSGKMWVTTGIVRGGKTYSSIEETLYLMELGALDLFDNSDRSISLIEMYEKV 60
           MGM EVIEK+GKMW +                                  +S +  +   
Sbjct: 54  MGMGEVIEKNGKMWAS---------------------------------QVSWLHNW--- 77

Query: 61  AGGKSGCCWELFEVYRHLKSLGYIIRRHDVAWSLKSVRSSHNPIALEATEESSQLEEMGS 120
               S CC E FE Y                     +++SH P+ALE TEES QLE+   
Sbjct: 78  ---LSWCCLE-FEEY---------------------IKTSHKPVALEVTEESKQLEDTNF 112

Query: 121 KVELCINKLFGELK------ISDVKPDFDIYLPNSRFRKSSPGDPNFLLYLSRS------ 168
           K EL INKL+  L       I+D++PDFD+YLPNSRFRKSSPGDP+FLLYLSR       
Sbjct: 113 KSELYINKLWVLLTSALRALINDLRPDFDVYLPNSRFRKSSPGDPSFLLYLSRGIHAGRH 172

Query: 169 ----------------NPPSRAEIEALERQCDGIPLKICLVTEGRVSFFSFDKVELPVL 211
                             PSRAEIEALERQC GIPLKICL TEGRVSFFSFDK  L + 
Sbjct: 173 ATSLCGMCGWGWGLVRGHPSRAEIEALERQCGGIPLKICLATEGRVSFFSFDKQPLHIF 231