Miyakogusa Predicted Gene

Lj1g3v4107040.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4107040.2 tr|F2CX46|F2CX46_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,44.35,3e-18,ARV1,Arv1 protein; seg,NULL; Arv1,Arv1
protein,CUFF.31951.2
         (249 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g28190.1                                                       357   8e-99
Glyma19g30960.1                                                       343   1e-94
Glyma19g30960.2                                                       246   2e-65

>Glyma03g28190.1 
          Length = 250

 Score =  357 bits (915), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 175/245 (71%), Positives = 199/245 (81%)

Query: 1   MGYTCIQCGFPIKTLYIQYSPGNIRLLKCENCKAVADEYIECEIMILVIDLLLHKPKAYR 60
           MGY CIQC  P+KTLY+QYSPGNIRL+KCENCKAVADEYIECEIMILVIDL+LHKPKAYR
Sbjct: 1   MGYRCIQCWCPVKTLYVQYSPGNIRLMKCENCKAVADEYIECEIMILVIDLILHKPKAYR 60

Query: 61  HLLYNVINQETLKFQGLLWKSAITFLLFDAYKCLILENXXXXXXXXXXXXXXXXXWCKIL 120
           HLL+NVINQET+KF GLLWK A+ FLLF++Y+CLILE+                   K+L
Sbjct: 61  HLLHNVINQETMKFHGLLWKLAVIFLLFESYRCLILESSKGKLGSSNSVSSLVSICWKVL 120

Query: 121 IDVFFGNFMFILAFFFMIKMFLHTSISISRCNDLLLVLMISCYFKIFLVAMMVWEFPSSA 180
           +DV  GN MF+L FFFM+KMF H SI+ISRC DLLL LMIS YFKIFL+AMMVW+FPSS 
Sbjct: 121 MDVIIGNLMFLLTFFFMVKMFFHVSITISRCIDLLLTLMISSYFKIFLIAMMVWDFPSSV 180

Query: 181 IFIIELFCLSSNAVALKVMTESTMSRCVCTCLCAYATKFLVTCVPELMLLGELIQGWSHM 240
           IFIIELFCLSSNA ALKVMTESTM RCV TC  AYA KF+VT + EL+LLG+L+QGWS M
Sbjct: 181 IFIIELFCLSSNAAALKVMTESTMRRCVWTCFSAYAIKFIVTRILELILLGQLMQGWSQM 240

Query: 241 PSSLS 245
           P + S
Sbjct: 241 PFTFS 245


>Glyma19g30960.1 
          Length = 247

 Score =  343 bits (879), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 171/249 (68%), Positives = 196/249 (78%), Gaps = 2/249 (0%)

Query: 1   MGYTCIQCGFPIKTLYIQYSPGNIRLLKCENCKAVADEYIECEIMILVIDLLLHKPKAYR 60
           MGY CIQCG P+KTLY+QYSPGNIRL+KCENCKAVADEYIECEIMIL IDL+LHKPKAYR
Sbjct: 1   MGYRCIQCGCPVKTLYVQYSPGNIRLMKCENCKAVADEYIECEIMILAIDLILHKPKAYR 60

Query: 61  HLLYNVINQETLKFQGLLWKSAITFLLFDAYKCLILENXXXXXXXXXXXXXXXXXWCKIL 120
           HLL+NVINQET+KFQGLLWK A+ FL F+ Y+CLILE+                   K+L
Sbjct: 61  HLLHNVINQETMKFQGLLWKLAVIFLFFEYYRCLILESSKGKLDSSMSVSPSVSICWKVL 120

Query: 121 IDVFFGNFMFILAFFFMIKMFLHTSISISRCNDLLLVLMISCYFKIFLVAMMVWEFPSSA 180
           +DV FGN MF+L FFFM+ M  H SI+I+RC DLLL LMIS YFKIF +AMMVWEFPSS 
Sbjct: 121 MDVLFGNLMFLLTFFFMVMMLFHVSITITRCIDLLLALMISSYFKIFFIAMMVWEFPSSV 180

Query: 181 IFIIELFCLSSNAVALKVMTESTMSRCVCTCLCAYATKFLVTCVPELMLLGELIQGWSHM 240
           IFIIELFCLSSNA  LKVMT+STMSRCV TC  AYA KF++T + EL L G+L+QGWS M
Sbjct: 181 IFIIELFCLSSNAATLKVMTDSTMSRCVWTCFSAYAIKFIITWILEL-LPGQLMQGWSQM 239

Query: 241 PSSLSLKPS 249
           P +   KP+
Sbjct: 240 PFTF-YKPA 247


>Glyma19g30960.2 
          Length = 207

 Score =  246 bits (627), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 119/173 (68%), Positives = 136/173 (78%)

Query: 1   MGYTCIQCGFPIKTLYIQYSPGNIRLLKCENCKAVADEYIECEIMILVIDLLLHKPKAYR 60
           MGY CIQCG P+KTLY+QYSPGNIRL+KCENCKAVADEYIECEIMIL IDL+LHKPKAYR
Sbjct: 1   MGYRCIQCGCPVKTLYVQYSPGNIRLMKCENCKAVADEYIECEIMILAIDLILHKPKAYR 60

Query: 61  HLLYNVINQETLKFQGLLWKSAITFLLFDAYKCLILENXXXXXXXXXXXXXXXXXWCKIL 120
           HLL+NVINQET+KFQGLLWK A+ FL F+ Y+CLILE+                   K+L
Sbjct: 61  HLLHNVINQETMKFQGLLWKLAVIFLFFEYYRCLILESSKGKLDSSMSVSPSVSICWKVL 120

Query: 121 IDVFFGNFMFILAFFFMIKMFLHTSISISRCNDLLLVLMISCYFKIFLVAMMV 173
           +DV FGN MF+L FFFM+ M  H SI+I+RC DLLL LMIS YFKIF +AMMV
Sbjct: 121 MDVLFGNLMFLLTFFFMVMMLFHVSITITRCIDLLLALMISSYFKIFFIAMMV 173