Miyakogusa Predicted Gene

Lj1g3v4107020.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4107020.1 tr|G7L5Y2|G7L5Y2_MEDTR General transcription
factor IIH subunit OS=Medicago truncatula
GN=MTR_7g0894,89.91,0,Ssl1,Ssl1-like; C1_4,TFIIH C1-like domain;
ZINC_FINGER_C2H2_1,Zinc finger, C2H2; ssl1: transcription,CUFF.31953.1
         (422 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g30920.1                                                       731   0.0  
Glyma11g07840.1                                                       717   0.0  
Glyma03g28160.1                                                       112   1e-24

>Glyma19g30920.1 
          Length = 420

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/422 (83%), Positives = 374/422 (88%), Gaps = 2/422 (0%)

Query: 1   MNNISGRPXXXXXXXXXXXXXXXXXXXXWERTYAEDRSWESLQEDESGLLRPIDNTAIHH 60
           MNN++ RP                    WERTYAEDRSWE+LQEDESGLLRPID TAI+H
Sbjct: 1   MNNVAERPLNGDVEDDDEDDGGGLEA--WERTYAEDRSWEALQEDESGLLRPIDTTAIYH 58

Query: 61  AQYXXXXXXXXXXXXXXXIQKGLIRYLYIVVDLSKAAAETDFRPSRMAVIGRLVETFIRE 120
           AQY               IQKGLIRYLYIVVDLSKAA+E DFRPSRMAV+G+ VE FIRE
Sbjct: 59  AQYRRRLRTLAATAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMAVMGKQVEAFIRE 118

Query: 121 FFDQNPLSHVGLVTIKDGVAHCLTDLGGSPESHIKALTGKLECSGDASLQNALELVVGYL 180
           FFDQNPLSHVGLVTIKDG+AHC+T+LGGSPESHIKAL GKLECSGDASLQNALELV+GYL
Sbjct: 119 FFDQNPLSHVGLVTIKDGIAHCITELGGSPESHIKALMGKLECSGDASLQNALELVLGYL 178

Query: 181 NQIPSYGHREVLILYSALSTCDPGDLMETIQKCRKSKIRCSVIGLAAEMFICKHICQETG 240
           NQIPSYGHREVLILYSALSTCDPGDLMETIQKC+KSKIRCSVIGLAAEMF+CKH+CQETG
Sbjct: 179 NQIPSYGHREVLILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFVCKHLCQETG 238

Query: 241 GTYSVALDESHFKELVLEHAPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTG 300
           GTYSVALDESHFKEL+LEHAPPPPAIAEYATANLIKMGFPQR+AEGSVAICTCHEEAKTG
Sbjct: 239 GTYSVALDESHFKELILEHAPPPPAIAEYATANLIKMGFPQRSAEGSVAICTCHEEAKTG 298

Query: 301 GGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPFDEISPSSRNDPSHSF 360
           GGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIV FDE++PSS+ND +HSF
Sbjct: 299 GGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVMFDEVTPSSQNDSNHSF 358

Query: 361 SNTCFGCQQSLLSQGNVPGISVTCPKCKQQFCLDCDIYIHESLHNCPGCESFRHSTSVTA 420
            NTCFGCQQSLLSQGN PG+SV CPKCKQQFCLDCDIY+HESLHNCPGCES RHS SVTA
Sbjct: 359 PNTCFGCQQSLLSQGNKPGLSVICPKCKQQFCLDCDIYVHESLHNCPGCESSRHSKSVTA 418

Query: 421 AQ 422
           +Q
Sbjct: 419 SQ 420


>Glyma11g07840.1 
          Length = 447

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/422 (81%), Positives = 370/422 (87%), Gaps = 3/422 (0%)

Query: 1   MNNISGRPXXXXXXXXXXXXXXXXXXXXWERTYAEDRSWESLQEDESGLLRPIDNTAIHH 60
           MNN++ RP                    WERTYAEDRSWE+LQEDESGLLRPID TAI+H
Sbjct: 29  MNNVAERPLNKDVEDDDEDDGGGLEA--WERTYAEDRSWEALQEDESGLLRPIDTTAIYH 86

Query: 61  AQYXXXXXXXXXXXXXXXIQKGLIRYLYIVVDLSKAAAETDFRPSRMAVIGRLVETFIRE 120
           AQY               IQKGLIRYLYIVVDLSKAA+E DFRPSRM V+G+ VE FIRE
Sbjct: 87  AQYRRRLRTLAATAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMVVMGKQVEAFIRE 146

Query: 121 FFDQNPLSHVGLVTIKDGVAHCLTDLGGSPESHIKALTGKLECSGDASLQNALELVVGYL 180
           FFDQNPLSHVGLVTIKDG+AHC+T+LGGSPESHIKAL GKLECSGDASLQNALELV+GYL
Sbjct: 147 FFDQNPLSHVGLVTIKDGIAHCITELGGSPESHIKALMGKLECSGDASLQNALELVLGYL 206

Query: 181 NQIPSYGHREVLILYSALSTCDPGDLMETIQKCRKSKIRCSVIGLAAEMFICKHICQETG 240
           NQIPSYGHREVLILYSALSTCDPGDLMETIQKC+KSKIRCSVIGLAAEMF+CKH+C+ETG
Sbjct: 207 NQIPSYGHREVLILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFVCKHLCEETG 266

Query: 241 GTYSVALDESHFKELVLEHAPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTG 300
           GTYSVALDESHFKEL+LEHAPPPPAIAEY+TANLIKMGFPQR+AEGSVAICTCHEEAKTG
Sbjct: 267 GTYSVALDESHFKELILEHAPPPPAIAEYSTANLIKMGFPQRSAEGSVAICTCHEEAKTG 326

Query: 301 GGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPFDEISPSSRNDPSHSF 360
           GGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIV FDE++PS + D S SF
Sbjct: 327 GGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVMFDEVTPSQK-DSSRSF 385

Query: 361 SNTCFGCQQSLLSQGNVPGISVTCPKCKQQFCLDCDIYIHESLHNCPGCESFRHSTSVTA 420
            NTCFGCQQSLLSQGN PG+SV CPKCKQQFCLDCDIY+HESLHNCPGCES RHS SVTA
Sbjct: 386 PNTCFGCQQSLLSQGNKPGLSVICPKCKQQFCLDCDIYVHESLHNCPGCESSRHSKSVTA 445

Query: 421 AQ 422
           +Q
Sbjct: 446 SQ 447


>Glyma03g28160.1 
          Length = 96

 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/94 (62%), Positives = 62/94 (65%), Gaps = 14/94 (14%)

Query: 255 LVLEHAPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTGGGYTCPRCKVRVCE 314
           L+LEHAPPPPAIAEYATANLIKMGFPQR+AEGS             G       K     
Sbjct: 1   LILEHAPPPPAIAEYATANLIKMGFPQRSAEGS-------------GDTLVQDAKFVSVS 47

Query: 315 LPTE-CRVCGLTLISSPHLARSYHHLFPIVPFDE 347
            P +   VCG TLISSPHLARSYHHLFPIV FDE
Sbjct: 48  FPLDVVSVCGFTLISSPHLARSYHHLFPIVMFDE 81