Miyakogusa Predicted Gene

Lj1g3v4083160.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4083160.1 tr|A9S9W5|A9S9W5_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_182654,34.01,9e-16,no description,Mog1/PsbP,
alpha/beta/alpha sandwich; PsbP,Photosystem II PsbP, oxygen evolving
compl,CUFF.31882.1
         (255 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g27850.1                                                       393   e-110
Glyma19g30670.1                                                       388   e-108
Glyma19g30670.2                                                       298   5e-81
Glyma07g17980.1                                                       152   3e-37
Glyma04g42010.1                                                        76   4e-14
Glyma06g12760.1                                                        74   2e-13
Glyma14g10440.1                                                        60   2e-09

>Glyma03g27850.1 
          Length = 265

 Score =  393 bits (1010), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/232 (81%), Positives = 209/232 (90%), Gaps = 6/232 (2%)

Query: 24  RTFRASASSDSVPATRSYQLIPPRREFLKGIALGALPLVLLRETPPPAEARDVEVGSFLP 83
              RAS  S+ V +  +      RREFLKG+AL  LPLV++RE PPP+ AR+VEVGSFLP
Sbjct: 27  HAIRASLDSEYVASRHTL-----RREFLKGVALMPLPLVVMRE-PPPSHAREVEVGSFLP 80

Query: 84  PSPADPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQTRIANILSGNYCQPKCAEPWV 143
           PSP+DPSFVLFKA+PKDTPALRAGNVQPY+FILPPTWKQ R+ANILSGNYCQPKCAEPWV
Sbjct: 81  PSPSDPSFVLFKATPKDTPALRAGNVQPYKFILPPTWKQARVANILSGNYCQPKCAEPWV 140

Query: 144 EVKFEDEKQGKVQVVASPLIRLTNKPNATIEDIGSPDKVIASLGPFVTGSTYDPDELIET 203
           EVKFEDEKQGKVQVVASPLIRLTNKPNA+IEDIGSP+K+IASLGPFVTG+T DPDEL+ET
Sbjct: 141 EVKFEDEKQGKVQVVASPLIRLTNKPNASIEDIGSPEKLIASLGPFVTGNTLDPDELLET 200

Query: 204 SVEKLGDQTYYKYALETPYALTGSHNLAKATAKGNTVVLFVASANDKQWQTS 255
           SVEK+GDQTYYKY LETPYALTG+HNLAKATAKGNTVVLFV SANDKQWQTS
Sbjct: 201 SVEKIGDQTYYKYVLETPYALTGTHNLAKATAKGNTVVLFVVSANDKQWQTS 252


>Glyma19g30670.1 
          Length = 260

 Score =  388 bits (996), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/234 (82%), Positives = 212/234 (90%), Gaps = 8/234 (3%)

Query: 23  VRTFRASASSDSVPATRSYQLIPPRREFLKGIA-LGALPLVLLRETPPPAEARDVEVGSF 81
           +   RASAS + VP+  +      RREFLKG+A L  LPLV+L E PPP++AR+VEVGSF
Sbjct: 21  LHAIRASAS-EYVPSQHTL-----RREFLKGVAALMPLPLVVLIE-PPPSDAREVEVGSF 73

Query: 82  LPPSPADPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQTRIANILSGNYCQPKCAEP 141
           LPPSP+DPSFVLFKAS KDTPALRAGNVQPY+FILPPTWKQ R+ANILSGNYCQPKCAEP
Sbjct: 74  LPPSPSDPSFVLFKASAKDTPALRAGNVQPYKFILPPTWKQARVANILSGNYCQPKCAEP 133

Query: 142 WVEVKFEDEKQGKVQVVASPLIRLTNKPNATIEDIGSPDKVIASLGPFVTGSTYDPDELI 201
           WVEVKFEDEKQGKVQVVASPLIRLTNKPNATIEDIGSP+K+IASLGPFVTG+T+DP+EL+
Sbjct: 134 WVEVKFEDEKQGKVQVVASPLIRLTNKPNATIEDIGSPEKLIASLGPFVTGNTFDPEELL 193

Query: 202 ETSVEKLGDQTYYKYALETPYALTGSHNLAKATAKGNTVVLFVASANDKQWQTS 255
           ETSVEKLGDQTYYKY LETPYALTG+HNLAKATAKGNTVVLFV SANDKQWQTS
Sbjct: 194 ETSVEKLGDQTYYKYVLETPYALTGTHNLAKATAKGNTVVLFVVSANDKQWQTS 247


>Glyma19g30670.2 
          Length = 200

 Score =  298 bits (762), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 138/150 (92%), Positives = 147/150 (98%)

Query: 106 AGNVQPYQFILPPTWKQTRIANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRL 165
           AGNVQPY+FILPPTWKQ R+ANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRL
Sbjct: 38  AGNVQPYKFILPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRL 97

Query: 166 TNKPNATIEDIGSPDKVIASLGPFVTGSTYDPDELIETSVEKLGDQTYYKYALETPYALT 225
           TNKPNATIEDIGSP+K+IASLGPFVTG+T+DP+EL+ETSVEKLGDQTYYKY LETPYALT
Sbjct: 98  TNKPNATIEDIGSPEKLIASLGPFVTGNTFDPEELLETSVEKLGDQTYYKYVLETPYALT 157

Query: 226 GSHNLAKATAKGNTVVLFVASANDKQWQTS 255
           G+HNLAKATAKGNTVVLFV SANDKQWQTS
Sbjct: 158 GTHNLAKATAKGNTVVLFVVSANDKQWQTS 187


>Glyma07g17980.1 
          Length = 97

 Score =  152 bits (385), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 71/85 (83%), Positives = 79/85 (92%)

Query: 171 ATIEDIGSPDKVIASLGPFVTGSTYDPDELIETSVEKLGDQTYYKYALETPYALTGSHNL 230
           +TIEDIGSP+K+IASLGPFV  +T+DP+EL+ETSVEKL DQTYYKY LETPYALTG+HNL
Sbjct: 1   STIEDIGSPEKMIASLGPFVIENTFDPEELLETSVEKLCDQTYYKYVLETPYALTGTHNL 60

Query: 231 AKATAKGNTVVLFVASANDKQWQTS 255
           AKAT KGNTVVLFV SANDKQWQTS
Sbjct: 61  AKATTKGNTVVLFVVSANDKQWQTS 85


>Glyma04g42010.1 
          Length = 267

 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 116/241 (48%), Gaps = 33/241 (13%)

Query: 23  VRTFRASASSD-SVPATRSYQLIPPRREFL-KGIALGALPLVLLRETPPPAEARDVEVGS 80
           +RT  ASAS D S+ + +   L+  RR  L  G++L + P   L      A  +   +  
Sbjct: 34  LRTVAASASKDISIESDKCSSLLVNRRTILASGVSLLSFPGESL------AVVKQGLLAG 87

Query: 81  FLP--PSPADPSFVLFKASPKDTPALRAGN--VQPYQFILPPTWKQT--RIANILSGNYC 134
            +P    P +  +  ++   + +     G   + PY F +P  W++    IA+ L G   
Sbjct: 88  RIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYSFRVPEEWEEVPVSIAD-LGGTE- 145

Query: 135 QPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNK--PNATIEDIGSPDKVIASLGPFVTG 192
                   ++++F   K+G++ V+ +P++R ++    NATIE IG P+KVI + GP + G
Sbjct: 146 --------IDLRFASSKEGRLFVIVAPVLRFSDDLGDNATIEKIGPPEKVINAFGPEMIG 197

Query: 193 STYDPDELIETSVEKLGDQTYYKYALETPYALTGSHNLAKATAKGNTVVLFVASANDKQW 252
              +   L  ++ E  G +TYY++ LE P      H    ATA GN + LF  + +  QW
Sbjct: 198 ENVEGKVLSVSAAEHEG-RTYYQFELEPP------HIFITATAAGNRLYLFGVTGSGLQW 250

Query: 253 Q 253
           +
Sbjct: 251 K 251


>Glyma06g12760.1 
          Length = 271

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 21/149 (14%)

Query: 109 VQPYQFILPPTWKQT--RIANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLT 166
           + PY F +P  W++    IA+ L G           ++++F   K+G++ V+ +P++R +
Sbjct: 124 IIPYSFRVPKEWEEVPVSIAD-LGGTE---------IDLRFASSKEGRLFVIVAPVLRFS 173

Query: 167 NK--PNATIEDIGSPDKVIASLGPFVTGSTYDPDELIETSVEKLGDQTYYKYALETPYAL 224
           +    NATIE IG P+KVI + GP + G   +   L     E  G +TYY++ LE P   
Sbjct: 174 DDLGDNATIEKIGPPEKVINAFGPEMIGENVEGKVLSANVAEHEG-RTYYQFELEPP--- 229

Query: 225 TGSHNLAKATAKGNTVVLFVASANDKQWQ 253
              H    ATA GN + LF  + +  QW+
Sbjct: 230 ---HIFITATAAGNRLYLFGVTGSGLQWK 255


>Glyma14g10440.1 
          Length = 37

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 35/37 (94%)

Query: 171 ATIEDIGSPDKVIASLGPFVTGSTYDPDELIETSVEK 207
           +TIEDIGS +K+IASLGPFVT +T+DP+EL+ETSVEK
Sbjct: 1   STIEDIGSLEKLIASLGPFVTRNTFDPEELLETSVEK 37