Miyakogusa Predicted Gene

Lj1g3v4080580.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4080580.1 tr|A8J1X1|A8J1X1_CHLRE Peroxisomal membrane
MPV17/PMP22-like protein OS=Chlamydomonas reinhardtii
GN,53.26,4e-19,seg,NULL; SUBFAMILY NOT NAMED,NULL; PEROXISOMAL
MEMBRANE PROTEIN 2, PXMP2 (MPV17),Mpv17/PMP22,CUFF.31838.1
         (206 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g30520.1                                                       152   3e-37
Glyma03g27540.1                                                        89   3e-18
Glyma20g26850.1                                                        66   2e-11
Glyma10g40480.1                                                        65   5e-11
Glyma02g08370.1                                                        50   2e-06

>Glyma19g30520.1 
          Length = 277

 Score =  152 bits (384), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/205 (49%), Positives = 116/205 (56%), Gaps = 25/205 (12%)

Query: 1   MAYGASACFAFSHG--------PICRQPISEPTRRHLQLPRCSSSSLPFNNNKFSTLPFN 52
           M YG + C A +H          +CRQ  +   ++   L    S SLPFN  K S  PF 
Sbjct: 1   MVYGGAMC-AHAHKFLLSPRALNLCRQNTTR-LQQFQTLTPLHSQSLPFNF-KNSATPFK 57

Query: 53  RSGPASFTGLRFHDSRLSALSN---XXXXXXXXXXXXXXXXXXXXXXXXXXXXKWSFLSW 109
            +             RLSALSN                               KWSFLSW
Sbjct: 58  PT-----------LIRLSALSNDGSGGNGPHGGAGGGGGSDGPNSGGAGDGGGKWSFLSW 106

Query: 110 YLALLAKHPVLVKALTSALLTLIGDLVCQLVIDKVQSPDFKRTFVFSLLGFVLVGPTLHF 169
           YLALL K+PV VKALTS++L LIGDL+CQLVID+V S DFKRTFVF+ LGF LVGPTLHF
Sbjct: 107 YLALLGKYPVAVKALTSSILNLIGDLICQLVIDQVPSLDFKRTFVFTFLGFALVGPTLHF 166

Query: 170 WYFYLSKLVTLPGASGAILRLFIYQ 194
           WY YLSKLVTLPGASGA+LRL + Q
Sbjct: 167 WYLYLSKLVTLPGASGALLRLVLDQ 191


>Glyma03g27540.1 
          Length = 182

 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/57 (78%), Positives = 49/57 (85%), Gaps = 1/57 (1%)

Query: 139 LVIDKVQSPDFKRTFVFSLLGFVLVGPTLHFW-YFYLSKLVTLPGASGAILRLFIYQ 194
           LVIDKV S DFKRTFVF+ LGF LVGPTLHFW Y Y+SKLVTLPGASGA+LRL + Q
Sbjct: 69  LVIDKVPSLDFKRTFVFTFLGFALVGPTLHFWRYLYMSKLVTLPGASGALLRLVLDQ 125


>Glyma20g26850.1 
          Length = 250

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 103 KWSFLSWYLALLAKHPVLVKALTSALLTLIGDLVCQLVIDKVQSP-DFKRTFVFSLLGFV 161
           K  F+SWYL ++   P+L K++TS+L+ +  DL  Q ++ +   P DF RT   +  G V
Sbjct: 72  KVGFVSWYLGMIKSWPILTKSVTSSLIYIAADLSSQTIVRESSEPFDFVRTSRMAGYGIV 131

Query: 162 LVGPTLHFWYFYLSKL 177
           ++GP+LHFW+ ++SKL
Sbjct: 132 ILGPSLHFWFNFVSKL 147


>Glyma10g40480.1 
          Length = 248

 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 49/76 (64%), Gaps = 1/76 (1%)

Query: 103 KWSFLSWYLALLAKHPVLVKALTSALLTLIGDLVCQLVIDKVQSP-DFKRTFVFSLLGFV 161
           K  F+ WYL ++   P+L K++TS+L+ +  DL  Q ++ +   P DF RT   +  G V
Sbjct: 70  KVGFVGWYLGMIKSWPILTKSVTSSLIYIAADLSSQTIVRESSEPFDFIRTSRMAGYGMV 129

Query: 162 LVGPTLHFWYFYLSKL 177
           ++GP+LHFW+ ++SKL
Sbjct: 130 ILGPSLHFWFNFVSKL 145


>Glyma02g08370.1 
          Length = 157

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 103 KWSFLSWYLALLAKHPVLVKALTSALLTLIGDLVCQLVI--DKVQSPDFKRTFVFSLLGF 160
           K+ F+ WY+ +L  +P++ K++TS+L+    D   Q++       S D  RT   ++ G 
Sbjct: 3   KFGFVGWYMRMLQTYPLVTKSVTSSLVFAAADFTSQIITLPSFPASYDLMRTSRMAIYGL 62

Query: 161 VLVGPTLHFWYFYLSKLV 178
           +++GP  H W+ +LSK++
Sbjct: 63  LILGPVQHKWFNFLSKII 80