Miyakogusa Predicted Gene

Lj1g3v4012920.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4012920.1 tr|G7L2N3|G7L2N3_MEDTR F-box protein SKIP24
OS=Medicago truncatula GN=MTR_7g087170 PE=4
SV=1,49.31,2e-18,F-box-like,NULL; F-box domain,F-box domain,
cyclin-like; seg,NULL; no description,NULL,CUFF.31777.1
         (204 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g29760.1                                                       253   9e-68
Glyma19g29760.2                                                       253   1e-67

>Glyma19g29760.1 
          Length = 267

 Score =  253 bits (646), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 125/187 (66%), Positives = 149/187 (79%), Gaps = 1/187 (0%)

Query: 16  LPEELWRRILEIGVESSGFTYKDLCCISISCRRFHRLSSDDSLWNXXXXXXX-XXXXXXX 74
           LP+ELWRRILEIG+ES+GF+YKDLCC+SISCRR HRLSS++ LWN               
Sbjct: 6   LPDELWRRILEIGIESNGFSYKDLCCVSISCRRLHRLSSEEPLWNRLLFSDYPQSQSHPS 65

Query: 75  XXXXXXXXXXXYKLRFERDKERRIAAHKRVVLRKESQVAEHSRKLRNIQTRVAEESIKAG 134
                      Y+LRFERDKERRIAAH+R VLRKESQVAEHSR+L++++TR+A+E+ KA 
Sbjct: 66  SSSSSSSSKSLYRLRFERDKERRIAAHRRAVLRKESQVAEHSRRLKDMKTRLAQETTKAT 125

Query: 135 ETAVELSSLRRIRQASVALNVWQPEVVRGRQKQMVEQCAVPAESRIHALEMELRLCKQQI 194
           +TA +LS+LRR+RQA VALNVWQPEVVRGRQKQMVEQ  VPAE RIHALEME +LCKQQI
Sbjct: 126 QTAQDLSNLRRLRQAFVALNVWQPEVVRGRQKQMVEQSVVPAECRIHALEMEFKLCKQQI 185

Query: 195 MGLEKYH 201
           +GLEK +
Sbjct: 186 LGLEKSY 192


>Glyma19g29760.2 
          Length = 238

 Score =  253 bits (646), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 125/187 (66%), Positives = 149/187 (79%), Gaps = 1/187 (0%)

Query: 16  LPEELWRRILEIGVESSGFTYKDLCCISISCRRFHRLSSDDSLWNXXXXXXX-XXXXXXX 74
           LP+ELWRRILEIG+ES+GF+YKDLCC+SISCRR HRLSS++ LWN               
Sbjct: 6   LPDELWRRILEIGIESNGFSYKDLCCVSISCRRLHRLSSEEPLWNRLLFSDYPQSQSHPS 65

Query: 75  XXXXXXXXXXXYKLRFERDKERRIAAHKRVVLRKESQVAEHSRKLRNIQTRVAEESIKAG 134
                      Y+LRFERDKERRIAAH+R VLRKESQVAEHSR+L++++TR+A+E+ KA 
Sbjct: 66  SSSSSSSSKSLYRLRFERDKERRIAAHRRAVLRKESQVAEHSRRLKDMKTRLAQETTKAT 125

Query: 135 ETAVELSSLRRIRQASVALNVWQPEVVRGRQKQMVEQCAVPAESRIHALEMELRLCKQQI 194
           +TA +LS+LRR+RQA VALNVWQPEVVRGRQKQMVEQ  VPAE RIHALEME +LCKQQI
Sbjct: 126 QTAQDLSNLRRLRQAFVALNVWQPEVVRGRQKQMVEQSVVPAECRIHALEMEFKLCKQQI 185

Query: 195 MGLEKYH 201
           +GLEK +
Sbjct: 186 LGLEKSY 192