Miyakogusa Predicted Gene

Lj1g3v3974780.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3974780.2 tr|B9GYG3|B9GYG3_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_646885
PE=4,84,2e-18,seg,NULL; no description,NULL,CUFF.31625.2
         (203 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g39790.1                                                       162   3e-40
Glyma15g16830.1                                                       136   1e-32
Glyma09g05510.1                                                       134   9e-32

>Glyma03g39790.1 
          Length = 251

 Score =  162 bits (409), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 82/116 (70%), Positives = 94/116 (81%), Gaps = 4/116 (3%)

Query: 1   MIRRVIEAYRMLSNFSPSQIIERECLDPFDTPECEAFDLFVNELFCVGKACSNSCVERAP 60
           MIRRVI+AYR+LSN +PS++IE ECLDPFDTPECEAFDLFVN+L CVGKACSNSCVERAP
Sbjct: 92  MIRRVIQAYRILSNCTPSELIESECLDPFDTPECEAFDLFVNQLLCVGKACSNSCVERAP 151

Query: 61  HSFTYVSSTGTARASSQGRITKFNRLLDSVLEIAFLC---YPPSQRILLEELLDSV 113
           H+FTY SSTGTARASSQG    + ++  +V +    C     PSQRILLEELLDS 
Sbjct: 152 HAFTYASSTGTARASSQGHGDDY-QVQCAVGQCPRSCIHYVTPSQRILLEELLDST 206


>Glyma15g16830.1 
          Length = 483

 Score =  136 bits (343), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 60/75 (80%), Positives = 66/75 (88%)

Query: 127 DPNLASTMRSQQQRALEFWEKNWHSGAPLKIKRLARDPQRFIWAVGIAQSRCINMQMRVG 186
           DP+LAST+R QQQR+LEFWE NWHS  PLKIKRLARDPQRF WAVGIAQSRCINMQ R+G
Sbjct: 209 DPDLASTIRKQQQRSLEFWENNWHSDVPLKIKRLARDPQRFAWAVGIAQSRCINMQTRIG 268

Query: 187 ALTQNANMLVPYAGL 201
           AL Q ANML+PYA +
Sbjct: 269 ALNQEANMLIPYADM 283


>Glyma09g05510.1 
          Length = 482

 Score =  134 bits (336), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 60/75 (80%), Positives = 65/75 (86%)

Query: 127 DPNLASTMRSQQQRALEFWEKNWHSGAPLKIKRLARDPQRFIWAVGIAQSRCINMQMRVG 186
           D +LAST+R QQQRALEFWE NWHS APLKIKRLA DPQRF WAVGIAQSRCINMQ R+G
Sbjct: 208 DSDLASTIRKQQQRALEFWESNWHSAAPLKIKRLAHDPQRFAWAVGIAQSRCINMQTRIG 267

Query: 187 ALTQNANMLVPYAGL 201
           AL Q ANML+PYA +
Sbjct: 268 ALNQEANMLIPYADM 282