Miyakogusa Predicted Gene
- Lj1g3v3945980.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3945980.1 Non Chatacterized Hit- tr|A9NWW1|A9NWW1_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,45.22,4e-19,seg,NULL; PPR: pentatricopeptide repeat
domain,Pentatricopeptide repeat; PPR,Pentatricopeptide repea,66053_g.1
(124 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma16g04780.1 196 6e-51
Glyma19g28470.1 188 1e-48
Glyma06g12290.1 74 2e-14
Glyma15g02310.1 66 1e-11
Glyma13g43070.1 65 1e-11
Glyma13g29910.1 64 5e-11
Glyma15g09200.1 59 9e-10
Glyma11g00960.1 57 6e-09
Glyma05g01480.1 56 9e-09
Glyma06g20160.1 56 9e-09
Glyma01g44620.1 55 1e-08
Glyma11g08360.1 54 3e-08
Glyma13g44480.1 54 3e-08
Glyma04g34450.1 52 1e-07
Glyma11g19440.1 52 1e-07
Glyma11g01360.1 50 5e-07
Glyma12g09040.1 50 7e-07
Glyma09g29910.1 50 7e-07
Glyma07g20800.1 49 9e-07
Glyma20g29780.1 49 9e-07
Glyma10g41080.1 49 1e-06
Glyma10g38040.1 48 2e-06
Glyma17g29840.1 47 4e-06
Glyma20g26190.1 46 7e-06
>Glyma16g04780.1
Length = 509
Score = 196 bits (497), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 95/124 (76%), Positives = 97/124 (78%)
Query: 1 MHEPGSRPSEIKHKLEXXXXXXXXXXXXXXXXXIRNDWEAAFTFFLWAGKQPGYAHSVRE 60
MHE GS PS+IK KLE RNDWEAAFTFFLWAGKQPGYAHSVRE
Sbjct: 38 MHEVGSGPSQIKQKLEHCSIVLSPELVVEVLSRTRNDWEAAFTFFLWAGKQPGYAHSVRE 97
Query: 61 YHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLLIMIRKYCAVRDVGRAINTFY 120
YHSMISILGKMRKFDTAWNLIE MRGG G SLVTPQTLLIMIRKYCAV DV RAINTFY
Sbjct: 98 YHSMISILGKMRKFDTAWNLIEEMRGGRNGLSLVTPQTLLIMIRKYCAVHDVARAINTFY 157
Query: 121 AFKR 124
A+KR
Sbjct: 158 AYKR 161
>Glyma19g28470.1
Length = 412
Score = 188 bits (477), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 90/120 (75%), Positives = 94/120 (78%)
Query: 5 GSRPSEIKHKLEXXXXXXXXXXXXXXXXXIRNDWEAAFTFFLWAGKQPGYAHSVREYHSM 64
GS PS+ K KLE RNDWEAAFTFFLWAGKQPGYAHS+REYHSM
Sbjct: 2 GSGPSQTKQKLEHCSVDLSAKLVVEVLLRTRNDWEAAFTFFLWAGKQPGYAHSIREYHSM 61
Query: 65 ISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLLIMIRKYCAVRDVGRAINTFYAFKR 124
ISILGKMRKFDTAWNLIE MR G TGPSLVTPQTLLIMIRKYCAV DV RAINTFYA+K+
Sbjct: 62 ISILGKMRKFDTAWNLIEEMRRGRTGPSLVTPQTLLIMIRKYCAVHDVARAINTFYAYKQ 121
>Glyma06g12290.1
Length = 461
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 41 AFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLL 100
AF FF WA KQ GY+HS+R YH MI L K+R++ W+L+ MR G ++ +T
Sbjct: 61 AFRFFEWAEKQRGYSHSIRAYHLMIESLAKIRQYQIVWDLVSAMRKKG----MLNVETFC 116
Query: 101 IMIRKYCAVRDVGRAINTFYAFKR 124
IM+RKY V A+ TF +
Sbjct: 117 IMMRKYARANKVDEAVYTFNVMDK 140
>Glyma15g02310.1
Length = 563
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 41 AFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLL 100
A+ F+ WA KQ G+ Y +MI +L +MR+F W LIE MR P L+TPQ +
Sbjct: 54 AYRFYSWASKQSGHRLDHDAYKAMIKVLSRMRQFGAVWALIEEMR--QENPHLITPQVFV 111
Query: 101 IMIRKYCAVRDVGRAINTF 119
I++R++ + R V +A+
Sbjct: 112 ILMRRFASARMVHKAVEVL 130
>Glyma13g43070.1
Length = 556
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 41 AFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLL 100
A+ F+ WA KQ G+ Y +MI +L +MR+F W LIE MR P L+TPQ +
Sbjct: 91 AYRFYSWASKQSGHRLDHDAYKAMIKVLSRMRQFGAVWALIEEMR--QENPHLITPQVFV 148
Query: 101 IMIRKYCAVRDVGRAINTF 119
I++R++ + R V +A+
Sbjct: 149 ILMRRFASARMVHKAVQVL 167
>Glyma13g29910.1
Length = 648
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 41 AFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLL 100
AF FF WAGK+PG+AH R Y+ M+ +LG+ R+F+T ++E M G L+T +T
Sbjct: 221 AFRFFCWAGKRPGFAHDSRTYNFMMCVLGRTRQFETMVAMLEEMGEKG----LLTMETFS 276
Query: 101 IMIRKYCAVRDVGRAINTFYAFKR 124
I I+ + + +A+ F K+
Sbjct: 277 IAIKAFAEAKQRKKAVGIFDLMKK 300
>Glyma15g09200.1
Length = 346
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 41 AFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLL 100
AF FF WAGK+PG+ H R Y+ M+ +LG+ R+F+T ++E M G G L+T +T
Sbjct: 100 AFRFFCWAGKRPGFDHDSRTYNCMMCVLGRTRQFETMVAMLEEM--GEMG--LLTMETFS 155
Query: 101 IMIRKYCAVRDVGRAINTFYAFKR 124
+ I+ + +A F K+
Sbjct: 156 VAIKTFAEANQRKKAAGIFDLMKK 179
>Glyma11g00960.1
Length = 543
Score = 56.6 bits (135), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 36 NDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVT 95
NDW A FF WA Q GY HS + M+ ILGK + FD +L+E M G VT
Sbjct: 136 NDWVPALGFFKWAKSQTGYRHSPELCNLMVDILGKCKSFDPMSDLVEEMAKLEQG--YVT 193
Query: 96 PQTLLIMIRKYCAVRDVGRAINTF 119
+T+ +IR+ R AI F
Sbjct: 194 LETMAKVIRRLAKARKHEDAIEAF 217
>Glyma05g01480.1
Length = 886
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 37 DWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTP 96
D A FF W +QPG+ H Y +M+ ILG+ R+FD+ L+E M G P++VT
Sbjct: 278 DPSVALGFFDWLRRQPGFRHDGHTYTTMVGILGRARRFDSISKLLEQMVKDGCQPNVVTY 337
Query: 97 QTLLIMIRKYCAVRDVGRAINTF 119
L I Y + A+N F
Sbjct: 338 NRL---IHCYGCANYLKEALNVF 357
>Glyma06g20160.1
Length = 882
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 37 DWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTP 96
D A +FF W +QPG+ H Y +M+ ILG+ R+F L+E M G P++VT
Sbjct: 365 DHSVALSFFYWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTY 424
Query: 97 QTLLIMIRKYCAVRDVGRAINTF 119
L I Y +G A+N F
Sbjct: 425 NRL---IHSYGRANYLGEALNVF 444
>Glyma01g44620.1
Length = 529
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 36 NDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVM-RGGGTGPSLV 94
NDW A FF WA GY HS Y+ M+ ILGK R FD+ L+E M R G V
Sbjct: 139 NDWVPALGFFKWAKSLTGYRHSPELYNLMVDILGKCRSFDSMSELVEEMARLEG----YV 194
Query: 95 TPQTLLIMIRKYCAVRDVGRAINTF 119
T +T+ ++R+ R AI F
Sbjct: 195 TLETMTKVMRRLARARKHEDAIEAF 219
>Glyma11g08360.1
Length = 449
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 36 NDWEAAFTFFLWA-GKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLV 94
NDW+ A FF W + HS ++ M+ ILGK +F W+LI M + P
Sbjct: 50 NDWKRALEFFNWVEDSHSQFHHSTDTFNLMLDILGKFFEFKLCWDLIRRMNAHPSSPP-- 107
Query: 95 TPQTLLIMIRKYCAVRDVGRAINTF 119
T +M ++Y + V AI+TF
Sbjct: 108 NHATFRLMFKRYVSAHSVNDAIDTF 132
>Glyma13g44480.1
Length = 445
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 36 NDWEAAFTFFLWAGK-QPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLV 94
NDW+ A FF W + + HS ++ M+ ILGK +F W+LI M + P
Sbjct: 46 NDWKRALEFFNWVEESHSQFHHSTDTFNLMLDILGKFFEFKLCWDLIRRMNAHPSSPP-- 103
Query: 95 TPQTLLIMIRKYCAVRDVGRAINTF 119
T +M ++Y + V AI+TF
Sbjct: 104 NHATFRLMFKRYVSAHSVNDAIDTF 128
>Glyma04g34450.1
Length = 835
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 37 DWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTP 96
D A FF W +QPG+ H Y +M+ ILG+ R+F L+E M G P++VT
Sbjct: 318 DHSVAVGFFCWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTY 377
Query: 97 QTLLIMIRKYCAVRDVGRAINTF 119
L I Y + A+N F
Sbjct: 378 NRL---IHSYGRANYLREALNVF 397
>Glyma11g19440.1
Length = 423
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 36 NDWEAAFTFFLWAGKQ-PGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLV 94
N A FF + P Y HS + + I +MR F++AW L+ MR GPS
Sbjct: 43 NHGPKALLFFKHLDRHLPSYTHSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPS-- 100
Query: 95 TPQTLLIMIRKYCAVRDVGRAINTFYAF 122
P+TL I+ +Y ++ RA+ TF +
Sbjct: 101 -PKTLAILAERYASIGKPHRAVRTFLSM 127
>Glyma11g01360.1
Length = 496
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 40 AAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGG 87
+A FFLWA PG+ HSV +H ++ ILG ++F W+ + MRG
Sbjct: 67 SAHRFFLWAKSIPGFQHSVMSFHILVEILGSCKQFAILWDFLIEMRGS 114
>Glyma12g09040.1
Length = 467
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 36 NDWEAAFTFFLWAGKQ-PGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLV 94
N A FF + P Y HS + + I +MR F++AW L+ MR GPS
Sbjct: 53 NHGPKALQFFKHLDRHHPSYTHSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPS-- 110
Query: 95 TPQTLLIMIRKYCAVRDVGRAINTFYAF 122
P+TL I+ +Y + RA+ TF +
Sbjct: 111 -PKTLAILAERYASNGKPHRAVRTFLSM 137
>Glyma09g29910.1
Length = 466
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 34 IRNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILG----KMRKFDTAWNLIEVMRGGGT 89
+R D + A FF WAG Q Y+H Y+ M+ IL K+++F +++E M+
Sbjct: 33 LRYDEKIALRFFTWAGHQEDYSHEPCAYNDMMDILSSTRYKVKQFRIVCDVLEYMKRNNR 92
Query: 90 GPSLVTPQTLLIMIRKY 106
++V + LL+++RKY
Sbjct: 93 --TMVPAEVLLVILRKY 107
>Glyma07g20800.1
Length = 164
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 36 NDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVT 95
D FF WA Q GY HS Y+ M+ +LGK + FD+ L+E M VT
Sbjct: 3 TDSATTLGFFKWAKSQTGYRHSPELYYLMVDVLGKCKSFDSMSELVEEM---ARLEGYVT 59
Query: 96 PQTLLIMIRKYCAVRDVGRAINTF 119
+T+ ++R+ R AI F
Sbjct: 60 LETMTKVMRRLARTRKHEDAIQAF 83
>Glyma20g29780.1
Length = 480
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 41 AFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLL 100
A+ FF+W +Q GY H+V YH ++SI + +F W L++ M G P+ T +T
Sbjct: 139 AYKFFVWCSQQEGYQHTVNAYHLVMSIYAECEEFKALWRLVDEMIEKGL-PA--TARTFN 195
Query: 101 IMIR 104
I+IR
Sbjct: 196 ILIR 199
>Glyma10g41080.1
Length = 442
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 41 AFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLL 100
A +FF WA KQ + H+ +H++I LGK+R+F W L+ M+ L+T T
Sbjct: 40 ALSFFRWAEKQSEFKHTTEAFHALIEALGKIRQFKMIWTLVNDMKQR----KLLTSDTFS 95
Query: 101 IMIRKYCAVRDVGRAINTF 119
++ R+Y R AI TF
Sbjct: 96 LVARRYARARKAKEAIKTF 114
>Glyma10g38040.1
Length = 480
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 41 AFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLL 100
A+ FF+W +Q GY H+V YH +++I + +F W L++ M G P+ T +T
Sbjct: 139 AYKFFVWCSQQEGYQHTVNAYHLVMNIYAECEEFKALWRLVDEMVEKGL-PA--TARTFN 195
Query: 101 IMIR 104
I+IR
Sbjct: 196 ILIR 199
>Glyma17g29840.1
Length = 426
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 48 AGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLLIMIRKYC 107
AGK+PG+AH R Y+ M+ +LG+ R+F+T +E M G L+T +T I I+ +
Sbjct: 1 AGKRPGFAHDSRTYNFMMCVLGRTRQFETMVAKLEEMGEKG----LLTMETFSIAIKAFA 56
Query: 108 AVRDVGRAINTFYAFKR 124
+ + + F K+
Sbjct: 57 EAKQRKKEVGIFDLMKK 73
>Glyma20g26190.1
Length = 467
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 41 AFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLL 100
A +FF WA KQ + ++ +H++I LGK+R+F W L+ M+ L+T +T
Sbjct: 66 ALSFFRWAEKQSEFKYTTEAFHALIEGLGKIRQFKMIWTLVNGMKQR----KLLTSETFA 121
Query: 101 IMIRKYCAVRDVGRAINTF 119
++ R+Y R AI TF
Sbjct: 122 LVARRYARARKAKEAIETF 140