Miyakogusa Predicted Gene

Lj1g3v3904640.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3904640.1 Non Chatacterized Hit- tr|D7M5Y5|D7M5Y5_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,30.2,1e-16,seg,NULL,CUFF.31474.1
         (224 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g07360.1                                                       260   6e-70
Glyma16g26350.1                                                       222   3e-58

>Glyma02g07360.1 
          Length = 909

 Score =  260 bits (665), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 130/224 (58%), Positives = 161/224 (71%), Gaps = 4/224 (1%)

Query: 1   MMGDDKFSSHFKEPLQTSLTLDQGNRRASEVYMPESMSGNIYSERGRYLIPRQDALSLSK 60
           MMG  +FSSH KEPLQTSLTLDQG RRA+EVYMPE+MS NIYS+ GRYLIPRQD L+   
Sbjct: 690 MMGGGQFSSHLKEPLQTSLTLDQGRRRATEVYMPENMSENIYSDGGRYLIPRQDPLTAV- 748

Query: 61  GNITNWAAKSTGMSAPPRPHVNTGDFIGHNWFSSDHQVRLGWNGSNNVXXXXXXXXXXXX 120
            N+T+WAA +  ++ P + H+NTGDFI H+WF +DHQVR G   + +             
Sbjct: 749 -NMTDWAANNARIAGPSQSHLNTGDFIDHHWFPADHQVRGG-GWNGSDGGGLSSQSLGTG 806

Query: 121 XXXDQSLFSVLSPCSQLRSGSPYESVRRPDQFLAPGAYGMLDAGTPRINAVVPPSSHPLD 180
              DQSLFS+LS C QL SGSPY+SVR  +QFLAP  YG+ DAGTPR+N V PP+SHPLD
Sbjct: 807 ASADQSLFSILSECDQLHSGSPYDSVRNTNQFLAPRTYGLADAGTPRVNTVAPPASHPLD 866

Query: 181 YFSGRDTPSAVVPNDMTWVSLXXXXXXXALNDQMGKPYLRSWNQ 224
           YF+ R+ PS +VP+D  W+SL       +L+DQ+ KPYLRSWN+
Sbjct: 867 YFTRREAPSGLVPDDTVWMSL-PPHQNSSLHDQIRKPYLRSWNR 909


>Glyma16g26350.1 
          Length = 912

 Score =  222 bits (565), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 120/230 (52%), Positives = 152/230 (66%), Gaps = 13/230 (5%)

Query: 1   MMGDDKFSSHFKEPLQTSLTLDQGNRRASEVYMPESMSGNIYSERGRYLIPRQDALSLSK 60
           MMG  +FSSHFKEPLQTSLTLDQG RRA+EVYMPE++S      + R + P   ++   +
Sbjct: 690 MMGGGQFSSHFKEPLQTSLTLDQGRRRATEVYMPENIS---IDPQARSIDPHARSID-PQ 745

Query: 61  GNITNWAAKSTGMSA------PPRPHVNTGDFIGHNWFSSDHQVRLGWNGSNNVXXXXXX 114
               +  A+S G  A      P + H+NTGDFIGH+WF +DHQVR G   + +       
Sbjct: 746 ARSFDPQARSIGPQARSFGCRPSQSHLNTGDFIGHHWFPADHQVRGG-GWNGSDGGGLSN 804

Query: 115 XXXXXXXXXDQSLFSVLSPCSQLRSGSPYESVRRPDQFLAPGAYGMLDAGTPRINAVVPP 174
                    DQSLFS+LS C QL SGS Y+SVR  DQFLAP  YG++DAGTPR+N V PP
Sbjct: 805 QSLGPGASSDQSLFSILSECDQLHSGSLYDSVRNTDQFLAPRTYGLVDAGTPRVNTVAPP 864

Query: 175 SSHPLDYFSGRDTPSAVVPNDMTWVSLXXXXXXXALNDQMGKPYLRSWNQ 224
           +S PLDYF+GR+ PS +VP+DM W+SL       +++DQMGKPYLRSWN+
Sbjct: 865 ASRPLDYFTGREAPSGLVPDDMAWMSL--PRQNSSIHDQMGKPYLRSWNR 912