Miyakogusa Predicted Gene

Lj1g3v3903020.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3903020.1 Non Chatacterized Hit- tr|C0P5C2|C0P5C2_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,46.43,2e-18,no
description,Nucleic acid-binding, OB-fold; seg,NULL; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,N,gene.g35607.t1.1
         (205 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g27340.1                                                       132   3e-31
Glyma08g10330.1                                                       127   6e-30
Glyma11g12110.1                                                       107   1e-23
Glyma12g04320.1                                                       104   6e-23
Glyma09g37070.2                                                        48   6e-06
Glyma09g37070.1                                                        48   6e-06

>Glyma05g27340.1 
          Length = 621

 Score =  132 bits (331), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/73 (89%), Positives = 72/73 (98%)

Query: 97  TVKSMRQASGARIEVDDSKANHDECLIIITTTESPSDLKSMSVEAVLLIKGKISDEDDTE 156
           T+KSMRQASGARIEVDDSKAN+DECLIIITTTESPSDLKSM+VEAVLL++GKI+DEDDT 
Sbjct: 331 TIKSMRQASGARIEVDDSKANYDECLIIITTTESPSDLKSMAVEAVLLMQGKINDEDDTT 390

Query: 157 VSIQLLVPSKVIG 169
           VSI+LLVPSKVIG
Sbjct: 391 VSIRLLVPSKVIG 403


>Glyma08g10330.1 
          Length = 625

 Score =  127 bits (320), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 64/73 (87%), Positives = 70/73 (95%)

Query: 97  TVKSMRQASGARIEVDDSKANHDECLIIITTTESPSDLKSMSVEAVLLIKGKISDEDDTE 156
           T+KSMRQASGA IEVDDSKAN DECLIIITTTESPSDLKSM+VEAVLL++GKI+DEDDT 
Sbjct: 328 TIKSMRQASGAHIEVDDSKANFDECLIIITTTESPSDLKSMAVEAVLLMQGKINDEDDTT 387

Query: 157 VSIQLLVPSKVIG 169
           VSI+LLVPSKVIG
Sbjct: 388 VSIRLLVPSKVIG 400


>Glyma11g12110.1 
          Length = 835

 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/113 (51%), Positives = 68/113 (60%), Gaps = 25/113 (22%)

Query: 6   AEFSDKHIVRLPETPDEIPGGGMLHIVSLLMQDKLTEAGKPGGRVEI------------- 52
             F+DK IVR+ ETPDEIP GG  H VSLLM DKL +  KPG RVE+             
Sbjct: 304 CRFADKQIVRVQETPDEIPEGGTPHTVSLLMHDKLVDTAKPGDRVEVTGIYRAMSVRIGP 363

Query: 53  -----------YIDCLHIKKSVKSRMLIEDTIEVENTEGKKAEVTFDEEKVMQ 94
                      YIDCLHIKK+ KSRML+ED ++V+  + K AEV FDEEKV Q
Sbjct: 364 TQRTVKSLFKTYIDCLHIKKTDKSRMLVEDAMDVDG-QDKNAEVLFDEEKVAQ 415


>Glyma12g04320.1 
          Length = 839

 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 67/113 (59%), Gaps = 25/113 (22%)

Query: 6   AEFSDKHIVRLPETPDEIPGGGMLHIVSLLMQDKLTEAGKPGGRVEI------------- 52
             F+DK IVR+ ETPDEIP GG  H VSLLM DKL +  KPG RVE+             
Sbjct: 308 CRFADKQIVRVQETPDEIPEGGTPHTVSLLMHDKLVDNAKPGDRVEVTGIYRAMSVRVGP 367

Query: 53  -----------YIDCLHIKKSVKSRMLIEDTIEVENTEGKKAEVTFDEEKVMQ 94
                      YIDCLHIKK+ KSRM +ED ++V+  + + AEV FDEEKV Q
Sbjct: 368 TQRTVKSLFKTYIDCLHIKKTDKSRMFVEDVMDVDG-QDRNAEVLFDEEKVAQ 419


>Glyma09g37070.2 
          Length = 540

 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 5/77 (6%)

Query: 98  VKSMRQASGARIEVDDSKANHDECLIIITTTESPSDLKSMSVEAVLLIKGKISD--EDDT 155
           +  +RQ SGA I+VD S    D+CLIII+T E   D  S ++EA + ++ + S+  E D+
Sbjct: 301 INQIRQDSGATIKVDSSATEGDDCLIIISTKEFFEDSFSPTIEAAVRLQPRCSEKVERDS 360

Query: 156 EV---SIQLLVPSKVIG 169
            +   + +LLVP+  IG
Sbjct: 361 GIVSFTTRLLVPTSRIG 377


>Glyma09g37070.1 
          Length = 540

 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 5/77 (6%)

Query: 98  VKSMRQASGARIEVDDSKANHDECLIIITTTESPSDLKSMSVEAVLLIKGKISD--EDDT 155
           +  +RQ SGA I+VD S    D+CLIII+T E   D  S ++EA + ++ + S+  E D+
Sbjct: 301 INQIRQDSGATIKVDSSATEGDDCLIIISTKEFFEDSFSPTIEAAVRLQPRCSEKVERDS 360

Query: 156 EV---SIQLLVPSKVIG 169
            +   + +LLVP+  IG
Sbjct: 361 GIVSFTTRLLVPTSRIG 377